Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq6 132 5e-26 seq11 93.3 4e-14 >seq6 Length=916956 Score = 132 bits (146), Expect = 5e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||| | ||||||||||| | |||||||||||||| ||||| || || Sbjct 466647 CCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATGTTATAGTCAGAT 466588 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || |||||| | |||||| ||||| | || | | ||| ||||| || || Sbjct 466587 AATGTTCTACCGTCTTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGGG 466528 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || |||||| ||| | | ||| | || || | ||||| || Sbjct 466527 ATACCTTCTTTATCTTGAATTTTGGCTTTAACGTTTTCAATAGTATCTGATGGTTCAACA 466468 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 |||| ||| | || || ||||| |||||||||||||| ||||||||| || Sbjct 466467 TCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCATACCT 466417 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||| | |||||||| || | |||||||||||||| ||||||||||| Sbjct 466191 CCTCCTCTTAATCTTAAAACTAAGTGTAAGGTAGATTCTTTTTGAATGTTGTAATCAGAT 466132 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || || || | |||||| ||||| | || | | ||| ||||| || || Sbjct 466131 AGTGTTCTTCCATCCTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGGA 466072 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || |||||| ||| | | ||| | || || | ||||| || Sbjct 466071 ATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGATGGTTCAACA 466012 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 |||| ||| | || || ||||| || ||||||||||| || |||||| || Sbjct 466011 TCAAGAGTAATTGTTTTCCCGGTTAAAGTTTTTACGAAAATCTGCATACCT 465961 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||| | |||||||| || | || ||||||||||| |||||||| || Sbjct 466419 CCTCCTCTTAATCTTAAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCAGAT 466360 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| | |||||| || ||| | || | | ||| ||||| ||||| Sbjct 466359 AGTGTTCTACCATCTTCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGAGGA 466300 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || |||||| ||| | | ||| | || || | || || || Sbjct 466299 ATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATGGTATCAGATGGCTCAACA 466240 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 |||| ||| | || || ||||| || ||||||||||| || |||||| || Sbjct 466239 TCAAGAGTGATTGTTTTCCCGGTTAAAGTTTTTACGAAAATCTGCATACCT 466189 Score = 95.1 bits (104), Expect = 1e-14 Identities = 680/1081 (63%), Gaps = 42/1081 (4%) Strand=Plus/Minus Query 156518 AAAACACGTCTCAAAAACAAATTACTGTGAAACGGTTCAAATGACTCGTTGTTGTTGAGT 156577 ||||||||||| || | | ||||| | | |||||||| || || || || | Sbjct 509196 AAAACACGTCTGTAATAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAA 509137 Query 156578 ATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCACAAGCAATGAATTACGTAATCCGTAT 156637 ||||||| || | || || ||||| || | ||| | ||||| | |||||||| | Sbjct 509136 ATTTGTGACGTTGAAGCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCGTGT 509077 Query 156638 TTTTGTATATTTATTTTCAACTGTGACCAGTCCCATAACGAAGTCGGTACCGT---ATTC 156694 || ||| ||| |||| || ||| ||||| | | | ||| | |||| Sbjct 509076 TTACTTATTTTTTTTTTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTC 509017 Query 156695 CACAAATCGTATTGCAATATTCCTTCGCTCGCTTTGCTACCGGCAAACGTGCTATAAGGC 156754 |||| ||| |||| |||||||||| ||| ||| ||||| | | | ||| || Sbjct 509016 CACATATCAAATTGTAATATTCCTTGGCTTGCTGGACTACCTTGATATGATTCATATGGT 508957 Query 156755 TCACTAACAGATGCCAGTTCGTAACTGGCCT--CGAGCGCAGCATGATACACAGTTTCAG 156812 |||| || ||||| ||| ||| | | | | | ||||||| ||||| ||||||| Sbjct 508956 CCACTTACTTGTGCCAATTC--AACAGACATTTCTAAAGCAGCATAATACATAGTTTCAA 508899 Query 156813 CAATTTGTTTATTCAATAGAACGGCAGCATCGCTCA----CGTACGG-TATGCGCAACAT 156867 ||| | |||| ||| | ||| || ||| | || || ||| | || | Sbjct 508898 ATATTCTTCTATTTAATT---CTTTAGCTTCT-TCAGATTCATATGGATAT-CTTAAAAG 508844 Query 156868 AACAAATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGA 156927 | ||||| ||| || || ||||| | || || || || || | ||| | |||| || Sbjct 508843 CATAAATGTATCTGCTAATCCTTGTACTCCTATTCCAATAGGTCTATGTCTTTTATTTGA 508784 Query 156928 tttttttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATTCAAACTATCCAC 156987 | ||| || || || || || |||| | ||||||||||||| ||| | || | Sbjct 508783 TCTTTCCGCTTCTTTAACTGGATAATAATTTCTTTCAATAATTTTATCTAAATT-TCTAG 508725 Query 156988 TACATGTTTGACCACAGTG-TGCAATAGTTGAAAATCAAAAG------TATCATTATTGA 157040 || ||| | | | | ||| || ||||| ||| | || ||| | Sbjct 508724 TAATAATTTTAGTAATATCATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAA 508665 Query 157041 TATATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAAT 157100 | |||| | ||||| || |||| |||||| || || ||| || || | || Sbjct 508664 CAAATTTGCATAATGCAATGGAAGCTAAATTACAAACAGCTACTTCATCAGGTGATGTAT 508605 Query 157101 ATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGC 157160 ||| | ||||| ||| ||||| |||||||| || ||| |||| ||||||| Sbjct 508604 ATTCAATAATTTCACAACATAAATTACTGCATTTAATTGTTCCTAAATTTTTTTGATTCG 508545 Query 157161 TTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTT 157220 ||| || || || || || |||||||| || ||| || ||||| ||| ||| Sbjct 508544 ATTTAGAATTACATGCATCTTTATATAACATATATGGTACACCAGTTTCTATTTGGCTTT 508485 Query 157221 CTATGATGTTGCG---CATTAATGTAACCGCGGGCATT---TGCTCGCGAAACTGGCCTT 157274 || || | || ||| ||| | || | ||| | | | || | ||| Sbjct 508484 GTA--ATATAGCAAACCATAAATCTTGT-GCAAGAATTGTTTTTTTTCCAAGATTTTCTT 508428 Query 157275 TATCCTCGTAATGTTTGTACCAGTATTCAAAGTCATCACCATACGTATCG-TTGAGCTTA 157333 | ||||| | | | || | | |||||| || ||||| | || || || ||| | Sbjct 508427 ---CTTCGTATTTTGTATATAATTTTTCAAATTCTTCACCCCAGGTTTCACTTAAGCCT- 508372 Query 157334 GGACACTCGTTAGGACACATTAATGACCATATACCGTTTTCTTCAACGCGTTTCATAAAT 157393 ||||| |||||||| |||||||| | ||| | ||||| | || | |||||||||| Sbjct 508371 GGACATTCGTTAGGGCACATTAAAGTCCAGTTCTTATTTTCCTTTACTCTTTTCATAAAT 508312 Query 157394 ATATCGGGAACCCATAAAGCGTTCATCAAATCACGCGCTTTGGTGTCTTCGCTGCCAATG 157453 | ||| || ||||| | ||| | | |||||||| ||| | ||||| | ||| Sbjct 508311 AAATCAGGTACCCAAATAGCATAAAATAAATCACGAGCTCTCAATTCTTCTTTACCATGA 508252 Query 157454 TTTCGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCACGGTTCAACGTACACTGCT 157513 ||| | | | ||||| || | ||| || ||||||| |||||||| || || || Sbjct 508251 TTTTTTCTTAAATCTAAAAATTCAAAAATATCTGAATGCCATGGTTCAACATATACAGCA 508192 Query 157514 TGGGCTCCTTTTCGCTT---GCCACCTTGATCCACGTGACGCACCATATTATTAAAAACT 157570 | ||||||| || ||||||||||| || | | | ||| |||||||||| Sbjct 508191 AAAGAACCTTTTCTTTTTCCTCCACCTTGATCTACATATCTTGCTGTATCATTAAAAACT 508132 Query 157571 C 157571 | Sbjct 508131 C 508131 >seq11 Length=1720574 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || ||||| | || || |||||||| ||||| || || | ||| || ||||| Sbjct 1496423 ACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCT 1496482 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | |||||| ||||| | || | | ||| ||||| || || || |||||||| || Sbjct 1496483 AATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGG 1496542 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 |||||| ||| | | ||| | || || | ||||| || |||| ||| | || || Sbjct 1496543 ATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTT 1496602 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| ||||||||||| || |||||||| Sbjct 1496603 CCGGTTAATGTTTTTACAAAGATTTGCAT 1496631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507014152830480