Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq10 250 2e-61 >seq10 Length=1634725 Score = 250 bits (276), Expect = 2e-61 Identities = 613/912 (67%), Gaps = 23/912 (3%) Strand=Plus/Minus Query 12802 TTAAAAATCAATATCTAGAGAAAATACATCATCGTCCTTATTTGA--CATAACAGACATT 12859 |||||||||| | | || ||||||||| | || | || ||||| ||||||| | Sbjct 1455838 TTAAAAATCAGTGTTTAAAGAAAATACTTGTTCTT--TTCTTTGAGCCATAACACCTGAT 1455781 Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 |||||||| || |||||| |||||||| || ||||||||||||| ||| || || Sbjct 1455780 TTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAAG 1455721 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAAC 12979 ||||| || || |||||||| ||| | ||| || ||||| | ||| Sbjct 1455720 TCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAAACATTCTAAT 1455661 Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCAC-AGTTCATTCCTATTAA 13038 |||| ||||||||||| || ||||| || ||| || || | |||||||| ||||| Sbjct 1455660 AATCGATCAGCAACAAATTCAATGTATTGAGACAT-AAGTCTTGAATTCATTCCAATTAA 1455602 Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTAT 13098 | ||| | || ||| | ||| | |||||| ||||||||||| ||||||| Sbjct 1455601 ATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTAT 1455542 Query 13099 GTCTCTTATTACGTTCTCT---AATGGAGGATTTGATAGATGCTTAAACATCATACATGC 13155 | | | || | ||| ||| | ||| | | ||| || || | ||| Sbjct 1455541 ATTTTGAACAACCTCTTCTGGTAATTTAT--TTTCCAACAAGCTATAA-ATTAAACAATT 1455485 Query 13156 AAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGG 13215 |||||| ||| ||||||||||||||||| || | || || |||||||| ||| | Sbjct 1455484 AAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCATG 1455425 Query 13216 CATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCC 13275 | | ||||||||| ||||||||| ||| ||| || ||| |||||||| Sbjct 1455424 TAATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCC 1455365 Query 13276 TTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCA 13335 ||| || |||| |||| | |||||| || | | | | | | | |||||| Sbjct 1455364 TTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCATT---TATCCA 1455308 Query 13336 CTTTCTGGCCCAGTTTGCTTT-TTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATA 13394 || ||||| |||||| || |||| || | | |||||||| || || | ||||| Sbjct 1455307 TTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGT-ATATTTTCAATAGCATGAAATA 1455249 Query 13395 AATAAtttttttC-CTTACTG-TCTAAAATATAAGTATCTATCAATAAGCTATACATTTC 13452 ||| || | || ||| || || ||||||| |||| || ||||| ||||| |||| Sbjct 1455248 AAT--TTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTATAGGTTTC 1455191 Query 13453 TGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTG 13512 || || |||||||| | |||||||| ||| ||||||| | | || || || || Sbjct 1455190 AGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTG 1455131 Query 13513 AACTTCGGAGTAAAATCTTTCT-GCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaa 13571 ||||| ||||| || || ||||| ||||| ||||| || |||||||| |||| Sbjct 1455130 TACTTCTCTTAAAAAT-TTACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAA 1455072 Query 13572 aaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTG 13631 |||| || || | || || ||||| | |||||| ||| | || ||| | ||| Sbjct 1455071 AAAATGCTAGCACATGTTTTATAAAATGTTTTTCATTTACATTTAATTTTTCAAAGTCTT 1455012 Query 13632 GAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTAT 13691 ||||| |||||||||||| || ||| | |||||||| || || |||| || |||| Sbjct 1455011 TCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTAT 1454952 Query 13692 ACATCATCCATA 13703 | | |||||| Sbjct 1454951 AAAAATTCCATA 1454940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430982195148678