Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq4 226 3e-54 seq7 188 9e-43 seq3 93.3 5e-14 >seq4 Length=794008 Score = 226 bits (250), Expect = 3e-54 Identities = 416/604 (69%), Gaps = 23/604 (4%) Strand=Plus/Minus Query 164392 AATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTC 164451 |||| |||||||||||| | || |||| | | ||||| ||||||| || || Sbjct 90884 AATTTTAATTTTGAAGAATTAGGTATAGGAGCATTAGATGAAGAATTTAAAACGATATTT 90825 Query 164452 AGACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAA 164511 ||| || | ||||| |||| | ||| | | ||||||||| | ||||| ||| Sbjct 90824 AGAAGAACCTTTGCAAGTAGAATATATCCAAATTATATAATAAAACAGTTAGGAATAAAA 90765 Query 164512 CATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGA 164571 ||| | || || || ||||| |||| ||||||||| ||| ||||||||||| ||| || Sbjct 90764 CATGTGAAGGGTATGATATTATATGGTCCTCCTGGTACCGGGAAAACATTAATAGCTAGA 90705 Query 164572 TGCATTGCTCAAGCTTTTAAATC--GCGACCCGTTAAAATTGTTAATGGTCCTGAATTAT 164629 || | | || | || || | | || ||| |||||| | ||||| |||||| ||| Sbjct 90704 CAAATAGGTAAAACATTAAATGCAAGAGAACCG--AAAATTATCAATGGGCCTGAAATAT 90647 Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689 | || || || |||||| | || |||| ||| || | || || ||| | ||||||||| Sbjct 90646 TAAATAAGTACGTAGGTCAATCTGAAGAAAATATTCGTAACTTATTTAAAGAGGCTGAAT 90587 Query 164690 AAGAACAAAAGAAAGCAGGTTTAGCTAGTAA--ATTACATGTTATTGTTTTTGATGAGAT 164747 || | ||| || | || || | | | ||||||| ||||| | || |||||||| Sbjct 90586 TGGAGTATAAGCAATCTGG-AGAG-AATTCATTATTACATATTATTATATTAGATGAGAT 90529 Query 164748 AGATGCTCTTT---GCAAAAAACGTGGTGAT-AATAT-----------TATTCATGATGC 164792 |||||| ||| | ||| | || ||| | || | | | ||||| Sbjct 90528 AGATGCAATTTGTCGACAAAGAGGTAGTGCTGCATCTAGTGGATCAGGTGTAAATGATAG 90469 Query 164793 AGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAAT 164852 | |||||||| || | || ||||||||||| ||| | ||||||||||| || | Sbjct 90468 TATAGTTAATCAATTATTATCAAAAATAGATGGAGTAAATAGTTTAAATAATATACTATT 90409 Query 164853 TGTAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATT 164912 | |||||||| ||| || |||||||| ||||| || || ||| |||| |||||||| Sbjct 90408 AATTGGTATGACAAACAGAATAGATTTAATCGATGAAGCATTGTTAAGACCAGGTCGATT 90349 Query 164913 AGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGT 164972 ||||| | || |||||| ||||||| | |||||||| || ||||||| ||||| | Sbjct 90348 TGAATTACATATTGAAATATCATTACCCAATAAAGAAGGTCGAATTCAAATATTAAATAT 90289 Query 164973 TCAT 164976 |||| Sbjct 90288 TCAT 90285 >seq7 Length=1169068 Score = 188 bits (208), Expect = 9e-43 Identities = 428/630 (68%), Gaps = 23/630 (4%) Strand=Plus/Minus Query 6798 TGATCGAGTTAATTGTTCTTTTATAGCTTTTAT-ATGATCTAAATAAATATGAGCATCTC 6856 || || | |||| || |||||| |||||| | ||||| ||||| |||||||| || Sbjct 995858 TGTTCTATTTAACTGGACTTTTA-AGCTTTCAACATGATTATTATAAACATGAGCATTTC 995800 Query 6857 CTAGCGTATGAATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTA 6916 | | ||| ||||||||| |||||| | || | |||| || || | |||||| | Sbjct 995799 CCAATACATGTATAAATTCAGCTGGTTGTAAATTACATACTTGTGCTATCATATATGTAA 995740 Query 6917 ATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGAT 6976 ||| | ||| ||||| | ||| || || ||||| | || | ||| |||||||||| Sbjct 995739 ATATAGAATAGGAAGCAATATTGAATGGAACACCAAGACCTAAATCACAAGATCTTTGAT 995680 Query 6977 AACATTG-ACAAGATAAAATATTGTCTATAGCATAAAATTGACACAATACATGACATGGA 7035 | ||| ||| ||||| | || | | ||||||||||||| || | |||||| ||| Sbjct 995679 A-CATAATACATGATAATTTTCCATCAAAAACATAAAATTGACATAAAATATGACAAGGA 995621 Query 7036 GGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAA--ATACGTCTAT 7093 ||||| | ||||||| ||| | |||||| ||| ||| ||| || |||||| Sbjct 995620 GGTAATGCCATTTGATCTAAATCTTTTACATTCCATGCA--CATAAAATAATTCGTCTA- 995564 Query 7094 CATTTGGATTTGTTTTTAATTTTGTT-ATAATTATTTGTAATTGATCTATACCCTGACCT 7152 ||| | | | |||||||||| || ||||| ||| ||| ||||| | ||| | | || Sbjct 995563 CATGTCGGATCGTTTTTAATTAAATTTATAATATTTTTTAACTGATCAACACCTTTATCT 995504 Query 7153 TCATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAA 7212 | ||||| || ||| || | |||| | ||| ||||| || ||||||||||| || ||| Sbjct 995503 TTATAATCAGCATGCATATCTGTATATTCAGCACCAAAGTGCCTCCATTGAAATCCGTAA 995444 Query 7213 ATAGGACCTAAATCACCTTCTTCACGATG--ATTAAATCCTAATCGATTTAAATTAGATT 7270 || |||||||| ||| |||| | ||| || | ||||| | || |||| | Sbjct 995443 ATTGGACCTAAGTCATTAACTTCTCTATGAAATAATTTCCTATT--ATCTAAAAACTCTC 995386 Query 7271 TTGATCCATAAGCATCCCAAATATGTACAGAtttttttGATAA---ATTTAAAGAATTTG 7327 ||| |||| ||| ||||| || ||| ||||| | |||| |||| ||||| Sbjct 995385 TTGTCCCATTAGCTTCCCATATTCTTACGTTTTTTTCTAATAATGTATTT---CCATTTG 995329 Query 7328 TAGATCCTTTAAGGAACCATAAAAGTTCTTCTACTATTCCACGCCAAAACATTCTTTTTG 7387 | ||| | | ||||||| | ||||| | || || | ||| | | |||||| Sbjct 995328 TTTCTCCCCTTATAAACCATAGCAACTCTTCAATGATACCTCTTACAAATAATTTTTTTG 995269 Query 7388 TAGTGAATAAAGGGA---ATGTACTTAAAT 7414 | || ||||| || | || |||||||| Sbjct 995268 TTGTTAATAATGGAAAATATTCACTTAAAT 995239 >seq3 Length=624158 Score = 93.3 bits (102), Expect = 5e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 19330 TAAAATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTTAC 19389 |||| | ||| || |||| || ||||||| |||| || ||||||||||| | Sbjct 500109 TAAAGTAAAAGTACGATCAGTTAGAATACCTCAAATCGGAGATAAGTTTGCAAGTAGGCA 500168 Query 19390 TGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGA 19449 || |||||||| ||| ||||| | ||| | ||||||||||| ||||| || Sbjct 500169 TGGACAAAAAGGTACAATCGGTATAACCTATAGAATGGAAGATATGCCATTTACATCTGA 500228 Query 19450 TGGTATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 ||||| | | || ||| ||||||| ||||||||||| ||||| ||| ||||| Sbjct 500229 TGGTACATTTCCTGATATTATTATGAACCCACATGCAGTTCCATCTCGTATGAC 500282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595871709512400