Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq6 149 6e-31 seq11 102 7e-17 >seq6 Length=916956 Score = 149 bits (164), Expect = 6e-31 Identities = 184/249 (74%), Gaps = 6/249 (2%) Strand=Plus/Minus Query 94763 TTTTTA--AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCT 94820 |||||| ||| ||| || |||||||| |||| || || ||||| ||||| ||||| | Sbjct 466439 TTTTTACGAAAATTTGCATACCTCCTCTTAATCTTAAAACTAAGTGTAAAGTCGATTCTT 466380 Query 94821 TTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGAT 94878 |||| | ||| || || |||||||| | ||| || | ||||||||| |||| || Sbjct 466379 TTTGAATGTTGTAGTCAG--ATAGTGTTCTACCATCTTCTAATTGTTTTCCGGCAAAAAT 466322 Query 94879 TAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCC 94938 ||||||||| ||||| ||||||||||||||||| || | |||||| || || || | Sbjct 466321 TAATCTTTGTTGATCAGGAGGAATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTC 466262 Query 94939 GACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAA 94998 | || |||| | || || |||| ||||| ||||| || || | |||||| || || Sbjct 466261 AATGGTATCAGATGGCTCAACATCAAGAGTGATTGTTTTCCCGGTTAAAGTTTTTACGAA 466202 Query 94999 GATCTGCAT 95007 |||||||| Sbjct 466201 AATCTGCAT 466193 Score = 134 bits (148), Expect = 1e-26 Identities = 181/249 (73%), Gaps = 6/249 (2%) Strand=Plus/Minus Query 94763 TTTTTA--AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCT 94820 |||||| ||| | | || |||||||| |||| || || ||||| || |||||||| | Sbjct 466211 TTTTTACGAAAATCTGCATACCTCCTCTTAATCTTAAAACTAAGTGTAAGGTAGATTCTT 466152 Query 94821 TTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGAT 94878 |||| | ||| ||||| |||||||| |||||| | |||||||| | || || Sbjct 466151 TTTGAATGTTGTAATCAG--ATAGTGTTCTTCCATCCTCTAATTGTTTTCCAGCGAAAAT 466094 Query 94879 TAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCC 94938 ||||||||| ||||| || |||||||||||||| || | |||||| || || || | Sbjct 466093 TAATCTTTGTTGATCAGGTGGAATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTC 466034 Query 94939 GACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAA 94998 | ||| |||| | || || |||| || || ||||| || || | |||||| || || Sbjct 466033 AATAGTATCAGATGGTTCAACATCAAGAGTAATTGTTTTCCCGGTTAAAGTTTTTACGAA 465974 Query 94999 GATCTGCAT 95007 |||||||| Sbjct 465973 AATCTGCAT 465965 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| |||| || || || || || |||||||| ||||| | |||||| || Sbjct 466647 CCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATGTTATAGTCAG-- 466590 Query 94841 ATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 ||| |||| | || || | |||||||| | || ||||||||||| ||||| || | Sbjct 466589 ATAATGTTCTACCGTCTTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTG 466530 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | ||||||||||| || | |||||| || || ||| | | ||| || | | || | Sbjct 466529 GGATACCTTCTTTATCTTGAATTTTGGCTTTAACGTTTTCAATAGTATCTGATGGTTCAA 466470 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | |||| || || |||||||| || | ||||| || || || ||||| Sbjct 466469 CATCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 466421 Score = 100 bits (110), Expect = 3e-16 Identities = 128/173 (74%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 94763 TTTTTA--AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCT 94820 |||||| ||| | | || |||||||| |||| || || ||||| || |||||||| | Sbjct 465983 TTTTTACGAAAATCTGCATACCTCCTCTTAATCTTAAAACTAAGTGTAAGGTAGATTCTT 465924 Query 94821 TTTGCACGTTATAATC-GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATT 94879 |||| | |||||| || | | || | || | || || | || ||||| |||| ||| Sbjct 465923 TTTGAATGTTATAGTCAGATAATGTTCTTCCA-TCTTCTAATTGCTTTCCAGCAAAAATT 465865 Query 94880 AATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGAC 94932 |||||||| ||||| || || ||||||||||| || | |||||| || || || Sbjct 465864 AATCTTTGTTGATCAGGTGGGATACCTTCTTTATCTTGAATTTTAGCTTTAAC 465812 >seq11 Length=1720574 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC-GCTCATAGTGTTGGAATCCTC 94857 ||||| || || || || || ||||| | |||||| || | | || | || | || || Sbjct 1496423 ACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCA-TCTTC 1496481 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 | |||||||| | || ||||||||||| ||||| || ||||| |||||||| || | Sbjct 1496482 TAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTG 1496541 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 |||||||| || || | | || |||| | || || |||| ||||| ||||| Sbjct 1496542 GATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTT 1496601 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || | ||||| |||||||| ||||| Sbjct 1496602 TCCGGTTAATGTTTTTACAAAGATTTGCAT 1496631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290981458040