Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq10 217 2e-51 >seq10 Length=1634725 Score = 217 bits (240), Expect = 2e-51 Identities = 620/940 (66%), Gaps = 23/940 (2%) Strand=Plus/Minus Query 21119 ATATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttt-tttGA--CATA 21175 |||||| ||||||||||| | ||| |||||| | | | ||||||| ||||| |||| Sbjct 1455846 ATATTTTCTTAAAAATCAGTGTTTAA--AGAAAATACT-TGTTCTTTTCTTTGAGCCATA 1455790 Query 21176 ATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAAT 21235 | || |||||||||||| |||||| ||||| || |||||||| ||||||| || Sbjct 1455789 ACACCTGATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAA 1455730 Query 21236 GATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGT 21295 ||||| | ||||| || ||||||||||| || | || | ||| ||||| | Sbjct 1455729 GATATTAAGTCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAAA 1455670 Query 21296 TCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATA 21355 | |||||||| ||| || |||||||| || |||||| |||| | | ||||||| Sbjct 1455669 CATTCTAATAATCGATCAGCAACAAATTCAATGTATTGAGACATAAGTCTTGAATTCATT 1455610 Query 21356 CCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCA 21415 || || || | ||| | || || | ||| ||| |||||| || ||||| Sbjct 1455609 CCAATTAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCT 1455550 Query 21416 ACAATTATATTTATTATCCTAGATGTACTAGGGGGATACAAT----AATTGTTTAAACAT 21471 || ||||||| | | | | | || || || | | || || | || Sbjct 1455549 TTAACTATATTTTGAA--CAACCTCTTCT--GGTAATTTATTTTCCAACAAGCTATAAAT 1455494 Query 21472 CAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGT 21531 ||||| |||||| || || |||||||| ||||| || ||||||||| |||||| Sbjct 1455493 TAAACAATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGT 1455434 Query 21532 TAAACCGGGCA-TTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CCTGAA 21589 |||||| | | || || | | ||||| ||||||||||||| | |||| || || | Sbjct 1455433 TAAACCATGTAATTTATTTTGT-TTTTTAAACCAAAATATTG-CACAAAAACTTCCACTA 1455376 Query 21590 AAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTA 21649 || || || || || || ||| || || | || |||| | | | || ||| | | Sbjct 1455375 AATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAG-AG-TTCGT-A 1455319 Query 21650 TCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATA 21709 || ||||||||| |||||||| ||| || | ||| || || | |||||| Sbjct 1455318 TCATTTATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATA 1455259 Query 21710 GCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTA 21769 || | || | || | | || | |||| | || |||| Sbjct 1455258 GCATGAAATAAATTTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTA 1455199 Query 21770 TACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCT 21829 || ||||||| ||||||||||| | ||||| ||||| | ||||| | | ||| || Sbjct 1455198 TAGGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAA-CTTTTTGGCTTC 1455140 Query 21830 GAACATT-GAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACT 21888 | ||| | || || ||||| ||| || ||||| ||||||||||||||| Sbjct 1455139 AATTATTTGTACTTCTCTTAAAAATTTACTAGCTAAATTTTCTAATACTATTCCATCACT 1455080 Query 21889 GGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTT 21948 || ||||||||||| | | || ||||||||||| | ||| || | ||||||||| Sbjct 1455079 AGCTGCAAAAAATGCTAGCACATGTTTTATAAAATGTTTTTCATTTACATTTAATTTTTC 1455020 Query 21949 CCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGC 22008 | ||| ||||| |||||||||||| |||||||| |||||||| || ||| Sbjct 1455019 AAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGC 1454960 Query 22009 CTTTTTATACATAATCCAGATATCATTATATATTATTGGA 22048 |||||||| | | |||| | ||| ||| || || ||| Sbjct 1454959 TTTTTTATAAAAATTCCATACTTCAGGATACATAATAGGA 1454920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531900540698360