Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq6 369 5e-97 seq10 168 8e-37 >seq6 Length=916956 Score = 369 bits (408), Expect = 5e-97 Identities = 966/1460 (66%), Gaps = 33/1460 (2%) Strand=Plus/Minus Query 62370 TAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 62429 ||||| ||||| ||||| ||||| | || ||||||||||| |||||||| | ||||| Sbjct 509181 TAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGACGTTGAA 509122 Query 62430 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCT 62489 || || ||||||||||| | | | | |||||| | |||| | | || ||||| | | Sbjct 509121 GCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCGTGTTTACTTATTTTTTTT 509062 Query 62490 TTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAA---CNNNNNNNNNNNNNNNTTGT 62546 |||| ||||||| |||| | ||| | |||| Sbjct 509061 TTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTGT 509002 Query 62547 AGAATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCC--TTCCTTCTCA 62603 | || || | || || | || | ||| ||||| || |||||||| || ||| | Sbjct 509001 AATATTCCTTGGCTTGCTGGACTA-CCTTGATATGATTCATATGGTCCACTTACTTGT-- 508945 Query 62604 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGAT-CTTCTTATT 62662 || | |||| | | ||||| ||| | ||||| || ||||| || || ||||| ||| Sbjct 508944 GCCAATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-ATT 508886 Query 62663 TAGATCTTGTGCTTC--CAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCT 62720 || |||| ||||| ||| | || ||||||| |||| || ||||| | || ||| Sbjct 508885 TAATTCTTTAGCTTCTTCAGATT--CATATGGATATCTTAAAAGCATAAATGTATCTGCT 508828 Query 62721 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 62780 |||||||| || || || || |||||||||||||| ||||| || |||| |||||| | Sbjct 508827 AATCCTTGTACTCCTATTCCAATAGGTCTATGTCTTTTATTTGATCTTTCCGCTTCTTTA 508768 Query 62781 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 62840 | ||||||||||| | || |||||||||| | |||||| ||| | ||| | | Sbjct 508767 ACTGGATAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATA 508708 Query 62841 TCCTTCAGTTTGAGAAAATCAAA-----TCGCCCATCTAT-TACAAACATGTTCAAGGCA 62894 || | | ||| ||||| ||| | ||||| ||||| || || ||| Sbjct 508707 TCATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCA 508648 Query 62895 ACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTG 62954 | || || | ||||||||| ||||| |||| || | ||||| || || ||| Sbjct 508647 ATGGAAGCTAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAA 508588 Query 62955 CAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCA 63014 || | |||||| || || || ||||||||||||| |||||| || ||||| ||| Sbjct 508587 CATAAATTACTGCATTTAATTGTTCCTAAATTTTTTTGATTCGATTTAGAATTACATGCA 508528 Query 63015 TCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAG 63074 || ||||| | || |||| ||||||||| || || || || || || ||| Sbjct 508527 TCTTTATATAACATATATGGTACACCAGTTTCTATTTGGCTTTGTAATATAGCAAACCAT 508468 Query 63075 ACGACTCGAGCCTTTATTATAGATTTGTATC---TCCTTTCTCTTTCGTATAGTGTATAC 63131 | || | || | || | ||| | || ||||| ||||||| |||||| Sbjct 508467 AAATCTTGTGC---AAGAATTGTTTTTTTTCCAAGATTTTCTTCTTCGTATTTTGTATAT 508411 Query 63132 AATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATC 63191 ||| ||| || || || ||||| | || || |||||||| | || ||||| Sbjct 508410 AATTTTTCAAATTCTTCACCCCAGGTTTCACTTAAGCCTGGACATTCGTTAGGGCACATT 508351 Query 63192 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 63251 || | ||| | | ||||| |||| ||||||||| | |||||| | ||||| ||| Sbjct 508350 AAAGTCCAGTTCTTATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCA 508291 Query 63252 ATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 63311 ||||| ||| | | ||| ||| || || || ||| ||| | | ||| | || Sbjct 508290 TAAAATAAATCACGAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAAT 508231 Query 63312 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT 63371 | | |||||| |||||||| ||||| | |||| || | | || | ||| | Sbjct 508230 TCAAAAATATCTGAATGCCATGGTTCAACATATACAGCAAAAGAACCTTTTCTTTTTCCT 508171 Query 63372 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63431 || || ||||||| ||||| || || | |||| ||||||| ||||| || | | ||| Sbjct 508170 CCACCTTGATCTACATATCTTGCTGTATCATTAAAAACTCTTAACATCGGGACTAAACCA 508111 Query 63432 TTTGATATACCATTGGTACCGGAGATAT-AGCTTCCACTG-GCACGAATATTACTAATTG 63489 |||||||||||||| || || ||| | || | || || | ||||| | | Sbjct 508110 TTTGATATACCATTAGTTCCTCTGATGTAAGAAT--TTTGAGCTCTAATATCTTGTACAG 508053 Query 63490 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGA 63549 | |||||| || ||||| ||||| || ||||| ||| | ||||| || ||| | | Sbjct 508052 CCACACCTATACCTCCTGCTGTTTTACTAATCAATGCACATTGCTTTAATGTTTCAAATA 507993 Query 63550 TACCCTCTATGCTATCATCGATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 63608 |||| ||||| |||| ||| || ||| || ||| || |||||||||| | | Sbjct 507992 TACCTTCTATTGAATCAGATTTCATTGATAA-TAAAAAGCATGAAGACATTTGGGGTCTT 507934 Query 63609 CTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGA 63668 ||||||| ||||||||| ||||||| ||| || ||||| |||||| || | || | Sbjct 507933 GGTGTTCCCGAATTAAATAATGTAGGAGTAGCATGAGTAAAATATTTTTGTGACATTAAA 507874 Query 63669 TTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATT 63728 | || || || | ||| || | ||| | ||| ||||||| | || | |||| Sbjct 507873 TGATAAGTTTCTAAAGCCTTTTCAAGATCATCTATATGTATTCCTATAGATACTCTCATT 507814 Query 63729 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63788 || | |||||||| | ||||| || || || || || || ||||| || |||| Sbjct 507813 AATAAATGCTGAGGACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTTTCT 507754 Query 63789 AAAGTTTTAAAACCAAAATA 63808 || |||||||| |||||||| Sbjct 507753 AATGTTTTAAATCCAAAATA 507734 >seq10 Length=1634725 Score = 168 bits (186), Expect = 8e-37 Identities = 324/473 (68%), Gaps = 6/473 (1%) Strand=Plus/Minus Query 33382 TTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCA 33441 ||||||| ||||||||| | | || |||| ||| || |||||||| || ||| Sbjct 1455411 TTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCTTCGACACATGCA 1455352 Query 33442 AAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCG 33501 || | || ||| || || || | | |||| |||||| || ||||| Sbjct 1455351 TTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCATTTATCCATTTAGCTGCCCATAAT 1455292 Query 33502 GCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTA 33561 || || ||||||| || || |||| || |||| ||| | || | | || || Sbjct 1455291 GCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTTAATCTCTCTTTC 1455232 Query 33562 CTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATG 33621 ||| ||| |||| |||| || || | |||||| |||| || || || ||||||| Sbjct 1455231 TCATCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAGAGTGTATATTTTCAACA 1455172 Query 33622 GCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGT 33681 || || ||||| | || || | | || || | || ||||||||| | ||||| | Sbjct 1455171 GCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGTACTTCTCTTAAAAAT--T 1455114 Query 33682 TCC--GCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTT 33739 | | || |||||||| |||||||| ||||| ||||||||||| || | ||||||| Sbjct 1455113 TACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAGCACATGTT 1455054 Query 33740 TTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA-TCATTGATATCTTTAGATATA 33798 ||||||||| |||||| | | ||| ||| ||| || || || | ||| | |||| | Sbjct 1455053 TTATAAAATGTTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAATCACTTGATAAA 1454995 Query 33799 TCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCA 33851 |||| |||||| | ||||||||||| ||||| || |||||||| | ||||| Sbjct 1454994 TCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTATAAAAATTCCA 1454942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946896313240