Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq11 134 1e-26 seq6 129 6e-25 >seq11 Length=1720574 Score = 134 bits (148), Expect = 1e-26 Identities = 170/230 (74%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 26750 TACTTTTTA-GTCAAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCA 26808 ||||||||| || | ||||||||| | ||||||||||||||||| |||||| | |||| Sbjct 1496651 TACTTTTTACGTTTACGAAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCA 1496592 Query 26809 CCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAG 26868 | | || | ||| || || || || || | || ||| ||| || || |||| Sbjct 1496591 CTCTTGATGTTGAACCATCTGATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAG 1496532 Query 26869 AAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATA 26928 |||| || || || |||||||||||| | |||| || || |||||| | ||||||| | Sbjct 1496531 AAGGAATTCCCCCTGATCAACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGAA 1496472 Query 26929 GAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGT 26977 ||| | | | | |||||||||||||||||||| || || | ||| |||| Sbjct 1496471 GAA-CATTATCTGACTATAACATTCAAAAAGAGTCAACCTTACATTTGGT 1496423 >seq6 Length=916956 Score = 129 bits (142), Expect = 6e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || |||||||||||||| |||||| | || || | || | ||| || Sbjct 466421 ATGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATTACTCTTGATGTTGAACCATCA 466480 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || || | || ||| || ||| || |||||||| || || || |||||| Sbjct 466481 GATACTATTGAAAACGTTAAAGCCAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAA 466540 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 |||||| | |||| || || |||||| | ||||| | ||| ||| | | | |||||||| Sbjct 466541 CAAAGATTAATTTTCGCTGGAAAACAATTAGAAGACGGTAG-AACATTATCTGACTATAA 466599 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||||||||||||| | ||| | || | ||| | |||||||| Sbjct 466600 CATTCAAAAAGAATCTACCTTACATTTAGTTTTAAGATTAAGAGGAGG 466647 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || |||||||| ||||| || ||| | ||||| | || | || || Sbjct 466193 ATGCAGATTTTCGTAAAAACTTTAACCGGGAAAACAATCACTCTTGATGTTGAGCCATCT 466252 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || ||||| || | || ||| || ||| || |||||||| || ||||| |||||| Sbjct 466253 GATACCATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCTGATCAA 466312 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | |||| | ||| |||||| | ||||||| ||||| | ||||| ||| Sbjct 466313 CAAAGATTAATTTTTGCCGGAAAACAATTAGAAGATGGTAGAACACTATCTGACTACAAC 466372 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||||||||| ||| | || | || | ||| | |||||||| Sbjct 466373 ATTCAAAAAGAATCGACTTTACACTTAGTTTTAAGATTAAGAGGAGG 466419 Score = 95.1 bits (104), Expect = 1e-14 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 26796 GGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAG 26855 |||||| | || ||| | || | || || ||| ||||| || | || ||| || Sbjct 465764 GGAAAAACTATAACCCTTGATGTTGAGCCATCCGATACCATTGAAAATGTTAAAGCTAAA 465823 Query 26856 ATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAA 26915 ||| || |||||||| || || || |||||||||||| | |||| | || || ||| Sbjct 465824 ATTCAAGATAAAGAAGGTATCCCACCTGATCAACAAAGATTAATTTTTGCTGGAAAGCAA 465883 Query 26916 CTCGAAGATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCT 26974 | ||||||| || ||| | | | |||||||||||||||||||||||||| | || | Sbjct 465884 TTAGAAGATGGAAG-AACATTATCTGACTATAACATTCAAAAAGAATCTACCTTACACTT 465942 Query 26975 GGTCCTGAGACTTAGAGGAGG 26995 || | ||| | |||||||| Sbjct 465943 AGTTTTAAGATTAAGAGGAGG 465963 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || |||||||| ||||| || ||| | || || | || | ||| || Sbjct 465965 ATGCAGATTTTCGTAAAAACTTTAACCGGGAAAACAATTACTCTTGATGTTGAACCATCT 466024 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || || || | || ||| || ||| || |||||||| || || || |||||| Sbjct 466025 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCTGATCAA 466084 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 |||||| | |||| || || |||||| | || |||| |||| | || || ||| Sbjct 466085 CAAAGATTAATTTTCGCTGGAAAACAATTAGAGGATGGAAGAACACTATCTGATTACAAC 466144 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||||||||||||| | || | || | ||| | |||||||| Sbjct 466145 ATTCAAAAAGAATCTACCTTACACTTAGTTTTAAGATTAAGAGGAGG 466191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478662166652080