Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq6 176 1e-38 seq7 161 3e-34 >seq6 Length=916956 Score = 176 bits (194), Expect = 1e-38 Identities = 447/671 (67%), Gaps = 8/671 (1%) Strand=Plus/Plus Query 363362 ATTATGAGAAG-GATCTCGAGTATGATATTTTCGGATATAAGACGATGGAGAAATCCTAC 363420 ||||| | ||| ||| || | |||||| ||| |||| ||| || | || | || ||| Sbjct 507708 ATTAT-ACAAGAGATTTCAATTATGATTATTTTGGATTTAAAACATTAGAAAGGTCTTAC 507766 Query 363421 CTATCTCGTATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCT 363480 ||| ||||| ||| | | ||| ||||||| || |||||| | |||||| | || || Sbjct 507767 TTATTACGTATTAATAATAAAATTATTGAACGTCCTCAGCATTTATTAATGAGAGTATCT 507826 Query 363481 ATTGGTATCCATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTG-C 363539 || || || ||| ||| |||| || | ||||| ||| | || | || | Sbjct 507827 ATAGGAATACATATAGATGATCTTGAAAAGGCTTTAGAAACTTATCA--TTTAATGTCAC 507884 Query 363540 TCGTGTATTC-ACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGA 363598 |||| || || || || || ||| | | ||| | ||||| | | || || | Sbjct 507885 AAAAATATTTTACTCATGCTACTCCTACATTATTTAATTCGGGAACACCAAGACCCCAAA 507944 Query 363599 TGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACAC 363658 ||||||| |||||| | || |||||| ||||| || || ||||| ||||| ||| Sbjct 507945 TGTCTTCATGCTTTTTATTATCAATGAAATCTGATTCAATAGAAGGTATATTTGAAACAT 508004 Query 363659 TTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATG 363718 | ||| | ||||| | ||| || | ||||| || || ||||| | | || || Sbjct 508005 TAAAGCAATGTGCATTGATTAGTAAAACAGCAGGAGGTATAGGTGTGGCTGTACAAGATA 508064 Query 363719 TTCGTGCACAGAACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCC 363777 || | || || || |||||| | || || | || ||| || ||||| | || || Sbjct 508065 TTAGAGCTCAAAATTCTTACATCAGAGGAACTAATGGTATA-TCAAATGGTTTAGTCCCG 508123 Query 363778 ATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAA 363837 ||| | | || ||| | |||| || || || || || || ||||||||||| | ||| Sbjct 508124 ATGTTAAGAGTTTTTAATGATACAGCAAGATATGTAGATCAAGGTGGAGGAAAAAGAAAA 508183 Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897 || | |||||| | ||| | || || ||| | ||||||||||| ||| | || | Sbjct 508184 GGTTCTTTTGCTGTATATGTTGAACCATGGCATTCAGATATTTTTGAATTTTTAGATTTA 508243 Query 363898 CGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTT 363957 | ||||| || ||||| |||||| | || |||||| | || ||||| ||||||| Sbjct 508244 AGAAAAAATCATGGTAAAGAAGAATTGAGAGCTCGTGATTTATTTTATGCTATTTGGGTA 508303 Query 363958 TCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACAC 364017 |||| |||||||| | || ||| | |||||| ||| | | | ||||| || Sbjct 508304 CCTGATTTATTTATGAAAAGAGTAAAGGAAAATAAGAACTGGACTTTAATGTGCCCTAAC 508363 Query 364018 GAATGTCCAGG 364028 ||||||||||| Sbjct 508364 GAATGTCCAGG 508374 >seq7 Length=1169068 Score = 161 bits (178), Expect = 3e-34 Identities = 460/694 (66%), Gaps = 16/694 (2%) Strand=Plus/Plus Query 111192 GAATATCAATATCTTCAGTTGATTTCTAAAGTACTAGAACATGGTGAATATCGAAG-TGA 111250 |||||||||||| | | | || | | | || || ||||| |||| ||| ||| Sbjct 995130 GAATATCAATATTTAAATATTATATATGATATAATAATGCATGGA-AATAAACAAGATGA 995188 Query 111251 CAGAACGGGCACTGGTACCGTAAGTTTATTTGGAGAAACAATGCGTTTTAATCT--GTCA 111308 ||||| || |||| ||||| ||||||| | | ||| |||||| | || | Sbjct 995189 TAGAACAGGTGTTGGTGTATTAAGTAAATTTGGATATATGATGAAATTTAATTTAAGTGA 995248 Query 111309 ACTCATTTTCCACTTCTCACAACAAAGCGAACATATTGGAAG-GGAATTGTCGAAGAACT 111367 | |||||||| | | |||||||| | || ||| ||| || || | ||||| | Sbjct 995249 AT--ATTTTCCATTATTAACAACAAAAAAATTAT-TTGTAAGAGGTATCATTGAAGAGTT 995305 Query 111368 TCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAAT 111427 || |||||||| | ||| ||||||| |||| | | || |||||| |||| ||| Sbjct 995306 GCTATGGTTTATAAGGGGAGAAACAAATGGAAATACATTATTAGAAAAAAACGTAAGAAT 995365 Query 111428 TTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGG---TCTTGTCGACAACGA 111484 ||||| | ||||| || | || ||| ||||| | | || | | || | | || Sbjct 995366 ATGGGAAGCTAATGGGACAAGAGAGTTTTTAGAT--AATAGGAAATTATTTC-ATAGAGA 995422 Query 111485 AGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAA 111544 || ||| | || ||| ||||||||||||||||| | ||||||||||| || || | Sbjct 995423 AGTTAATGACTTAGGTCCAATTTACGGATTTCAATGGAGGCACTTTGGTGCTGAATATAC 995482 Query 111545 AACCATGCACGACTCAT-ATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATC 111603 | ||||| | || || || | | || |||||| ||| | ||| | || || Sbjct 995483 AGATATGCATG-CTGATTATAAAGATAAAGGTGTTGATCAGTTAAAAAATATTATAAATT 995541 Query 111604 AAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCAT 111663 |||||| ||| | || || | | | || |||||| | |||||||||| ||| | | Sbjct 995542 TAATTAAAAACGATCCGACATGTAGACGAATTATTTTATGTGCATGGAATGTAAAAGATT 995601 Query 111664 TGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGA 111723 | || |||||||| | || || |||||| || | || || |||||||| || || | Sbjct 995602 TAGATCAAATGGCATTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTTGATGGAA 995661 Query 111724 TGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATA 111783 | ||||| |||||||| ||||| |||| | |||||||||||||| || |||| Sbjct 995662 AATTATCATGTATTATGTATCAAAGATCTTGTGATTTAGGTCTTGGTGTTCCATTCAATA 995721 Query 111784 TTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTG 111843 |||| || | || |||| | | || || || | ||| | |||| | || Sbjct 995722 TTGCTTCCTATTCTATATTTACATATATGATAGCACAAGTATGTAATTTACAACCAGCTG 995781 Query 111844 AATTCATTCACGTTATCGGAGATGCGCATGTTTA 111877 |||| || || || | ||| |||| |||||||| Sbjct 995782 AATTTATACATGTATTGGGAAATGCTCATGTTTA 995815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303352948730498