Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq6 138 1e-27 seq11 111 1e-19 >seq6 Length=916956 Score = 138 bits (152), Expect = 1e-27 Identities = 171/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || |||||||||||||| |||||| | ||||| | || || || ||| | Sbjct 466421 ATGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATTACTCTTGATGTTGA-ACCATC 466479 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || || | || ||| || ||| || |||||||| || || || ||||| Sbjct 466480 AGATACTATTGAAAACGTTAAAGCCAAAATTCAAGATAAAGAAGGTATCCCACCTGATCA 466539 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 ||| ||| | |||| || || || ||| | ||||| | || ||| | | | || |||| Sbjct 466540 ACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGACGGTAG-AACATTATCTGACTATA 466598 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||||||||||||||||| | |||||||| |||||||| |||||||| Sbjct 466599 ACATTCAAAAAGAATCTACCTTACATTTAGTTTTAAGATTAAGAGGAGG 466647 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || |||||||| ||||| || ||| | || || | || || ||| ||| | Sbjct 466193 ATGCAGATTTTCGTAAAAACTTTAACCGGGAAAACAATCACTCTTGATGTTGAG-CCATC 466251 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || ||||| || | || ||| || ||| || |||||||| || ||||| ||||| Sbjct 466252 TGATACCATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCTGATCA 466311 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| ||| | |||| | ||| || ||| | ||||||| |||| | || || || Sbjct 466312 ACAAAGATTAATTTTTGCCGGAAAACAATTAGAAGATGGTAGAACACTATCTGACTACAA 466371 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||||||||||||| || | || ||||| |||||||| |||||||| Sbjct 466372 CATTCAAAAAGAATCGACTTTACACTTAGTTTTAAGATTAAGAGGAGG 466419 Score = 116 bits (128), Expect = 3e-21 Identities = 148/201 (74%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 24018 GGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAG 24077 |||||| | || ||| | || || ||| | ||| ||||| || | || ||| || Sbjct 465764 GGAAAAACTATAACCCTTGATGTTGAGCCATCCGATACCATTGAAAATGTTAAAGCTAAA 465823 Query 24078 ATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAA 24137 ||| || |||||||| || || || |||||||| ||| | |||| | || |||||| Sbjct 465824 ATTCAAGATAAAGAAGGTATCCCACCTGATCAACAAAGATTAATTTTTGCTGGAAAGCAA 465883 Query 24138 CTCGAAGATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTT 24196 | ||||||| |||| | | | | || ||||||||||||||||||||||| | || || Sbjct 465884 TTAGAAGATGGAAGAA-CATTATCTGACTATAACATTCAAAAAGAATCTACCTTACACTT 465942 Query 24197 AGTGTTAAGATTGAGAGGAGG 24217 ||| |||||||| |||||||| Sbjct 465943 AGTTTTAAGATTAAGAGGAGG 465963 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || |||||||| ||||| || ||| | ||||| | || || || ||| | Sbjct 465965 ATGCAGATTTTCGTAAAAACTTTAACCGGGAAAACAATTACTCTTGATGTTGAA-CCATC 466023 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || || | || ||| || ||| || |||||||| || || || ||||| Sbjct 466024 TGATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCTGATCA 466083 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| ||| | |||| || || || ||| | || |||| |||| | ||||| || Sbjct 466084 ACAAAGATTAATTTTCGCTGGAAAACAATTAGAGGATGGAAGAACACTATCTGATTACAA 466143 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||||||||||||| | || ||||| |||||||| |||||||| Sbjct 466144 CATTCAAAAAGAATCTACCTTACACTTAGTTTTAAGATTAAGAGGAGG 466191 Score = 116 bits (128), Expect = 3e-21 Identities = 571/890 (64%), Gaps = 43/890 (5%) Strand=Plus/Minus Query 132406 ATTCCACAAATCAAACTGTAAATGACCGCTACTTGCAGGAGATCCGTTATAAGAATCGTA 132465 |||||||| |||||| ||||| || ||||| ||| || | ||| || || || Sbjct 509020 ATTCCACATATCAAATTGTAATATTCCTTGGCTTGCTGGACTACCTTGATATGATTCATA 508961 Query 132466 TGCTCCGTGTAATTTGGCAAGTTCTATGCTCTGAC---TC-AGGGCACCATAATAAATAG 132521 || ||| || || || | ||| | | ||| || | ||| ||||||| |||| Sbjct 508960 TGGTCCACTTACTTGTGCCAATTCAA----CAGACATTTCTAAAGCAGCATAATACATAG 508905 Query 132522 TCTCTGAGATTTTTCTATTCAATTCCCTTGCTTGTTGACTGTCGTAGGGCAAATTTAAAA 132581 | || | ||| ||||||| ||||| | |||| || | || || || | |||||| Sbjct 508904 TTTCAAATATTCTTCTATTTAATTCTTTAGCTTCTTCAGATTCATATGGATATCTTAAAA 508845 Query 132582 TAGCGAACGCATCGGCAAGTCCCTGAATGCCGATACCGATGGGTCTATGTTTAAAATTCG 132641 || | ||| || | ||| || | || || || || ||||||||| | ||| | Sbjct 508844 GCATAAATGTATCTGCTAATCCTTGTACTCCTATTCCAATAGGTCTATGTCTTTTATTTG 508785 Query 132642 ATACTTGTGCGCTAGTC--AGCGGATAAAAGTTTTTGTCTATTATTTTATTGAGATTGTT 132699 || ||| | |||| | | |||||| | ||| | || || ||||||| | ||| | Sbjct 508784 AT-CTT-TCCGCTTCTTTAACTGGATAATAATTTCTTTCAATAATTTTATCTAAATTTCT 508727 Query 132700 AGTGACAACTCTAGCCACTTTATATAGCGATTCAAAGTCAAAGTTTTTAGTCCTTTTGT- 132758 ||| | || | ||| | | ||||| || ||| | ||| | ||| |||| | Sbjct 508726 AGTAATAATTTTAGTAATATCATATAATTTTTTAAAATTAAATTCTTTT----TTTTCTC 508671 Query 132759 TGGCAAAACAATTG---ACGGCAATCGAGGCCAAATTGCATACGGCTGTCTCTTTA--TT 132813 | ||| | | ||| | ||||| || || ||||| || || ||| || | | | Sbjct 508670 TATCAACAAATTTGCATAATGCAATGGAAGCTAAATTACAAACAGCTACTTCATCAGGTG 508611 Query 132814 ATCGCTATACTGTACGATTTCTGCACACAAATTACTGTTTCGAATAACTCCCAAGttttt 132873 || ||| | || ||||| ||| ||||||||| | ||| ||| || ||||| Sbjct 508610 ATGTATATTCAATA--ATTTCACAACATAAATTACTGCATTTAATTGTTCCTAAATTTTT 508553 Query 132874 ttGATTGTTTTTCTCGTTTACGTT-ATCTTTATGCAACATGTACGGACCTCCGGTTTCGA 132932 |||||| ||| || || | |||||||| ||||| || || | || ||||| | Sbjct 508552 TTGATTCGATTTAGAATT-ACATGCATCTTTATATAACATATATGGTACACCAGTTTCTA 508494 Query 132933 CCTGAATTTCGATAATTTTTCTGTGAAGA--TCTAACGCCAAAATTTGTTCTTTAAACTT 132990 || ||| |||| | | | | ||| || | |||| ||| ||| | Sbjct 508493 TTTGGCTTTG--TAATATAGCAAACCATAAATCTTGTGCAAGAATT-GTTTTTTTTCCAA 508437 Query 132991 GCCCTGAGTCT-CGTAACTTTCGTATAATCGCTCAAATTCTTCGCCATAGCAGTCGTTCA 133049 | | ||| |||| || |||||| ||||||||||| || || || | | Sbjct 508436 GATTTTCTTCTTCGTATTTTGTATATAATTTTTCAAATTCTTCACCCCAGGTTTCACTTA 508377 Query 133050 AACCGGGACACTCGTCAGGACACATCAATGACCA----TTTTTCTCCTGCGCTCACCCTT 133105 | || ||||| |||| ||| ||||| || | ||| || || |||| | || ||| Sbjct 508376 AGCCTGGACATTCGTTAGGGCACATTAAAGTCCAGTTCTTATTTTCCT----TTACTCTT 508321 Query 133106 TTCATGAACAACGAAGGTGTCCACATGGCAAAAAATAAATCGCGAGCCTTCATATCTTCC 133165 ||||| || || |||| ||| || ||| |||||||||| ||||| ||| ||||| Sbjct 508320 TTCATAAATAAATCAGGTACCCAAATAGCATAAAATAAATCACGAGCTCTCAATTCTTCT 508261 Query 133166 GCGCCCATATTTCGTTTCAAGTCCaaaaaagtaaaaaTGTCTGCATGCCAAGGCTCGATA 133225 || |||| | | || || ||||| |||||| |||| |||||| || || | | Sbjct 508260 TTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATATCTGAATGCCATGGTTCAACA 508201 Query 133226 TATACGGCCAAAGCGCCTTTCCTTTTACCT---CCCTGATCCACATGTCT 133272 ||||| || |||| ||||| ||||| ||| || ||||| |||| ||| Sbjct 508200 TATACAGCAAAAGAACCTTTTCTTTTTCCTCCACCTTGATCTACATATCT 508151 >seq11 Length=1720574 Score = 111 bits (122), Expect = 1e-19 Identities = 156/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 ||||||||| | ||||||||||||||||| |||||| | || || | || || || || Sbjct 1496634 AAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAA-CC 1496576 Query 24048 AAC-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | | || || || || | || ||| ||| || || |||||||| || || || || Sbjct 1496575 ATCTGATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCCCCCTGA 1496516 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATT 24165 |||||| ||| | |||| || || || ||| | ||||||| |||| | | | | || | Sbjct 1496515 TCAACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGAAGAA-CATTATCTGACT 1496457 Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||||||||||||||| || || | ||||| || Sbjct 1496456 ATAACATTCAAAAAGAGTCAACCTTACATTTGGT 1496423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429935795646045