Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq6 100 3e-16 >seq6 Length=916956 Score = 100 bits (110), Expect = 3e-16 Identities = 152/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 131026 ACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCTCATGGTGCGCGAGTCCTC 131084 ||||| |||| ||| || || ||||||||||||||||| | | || | | | ||||| Sbjct 466173 ACTAAGTGTAAGGTAGATTCTTTTTGAATGTTGTAATCAGATAGTGTTCTTCCA-TCCTC 466115 Query 131085 TAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGT 131144 || || || || ||| | ||||| | || || || || || || |||||||| || | Sbjct 466114 TAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGGAATACCTTCTTTATCT-T 466056 Query 131145 GATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTT 131203 || ||| |||| | | | || | |||||| | | || | || | |||| |||| Sbjct 466055 GAATTTTAGCTTTAACATTTTCAATAGTATCAGATGGTTCAACATCAAGAGTAATTGTTT 465996 Query 131204 TACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | ||||||| ||||||||||||||||||||| Sbjct 465995 TCCCGGTTAAAGTTTTTACGAAAATCTGCAT 465965 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 131026 ACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCTCATGGTGCGCGAGTCCTC 131084 |||||||||| ||| || || ||||||||||| || || | | ||| | | ||| || Sbjct 466629 ACTAAATGTAAGGTAGATTCTTTTTGAATGTTATAGTCAGATAATGTTCTACC-GTCTTC 466571 Query 131085 TAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGT 131144 || || || || ||| | ||||| | || || || || ||||| |||||||| || | Sbjct 466570 TAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTATCT-T 466512 Query 131145 GATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTT 131203 || ||| |||| | | | || | |||||| | | || | || | |||| |||| Sbjct 466511 GAATTTTGGCTTTAACGTTTTCAATAGTATCTGATGGTTCAACATCAAGAGTAATTGTTT 466452 Query 131204 TACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | ||||||| |||||||||||||| ||||| Sbjct 466451 TTCCGGTTAATGTTTTTACGAAAATTTGCAT 466421 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 131026 ACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATC-GCTCATGGTGCGCGAGTCCTC 131084 ||||| |||| ||||| || |||||||||||||| || | | || | | | || || Sbjct 466401 ACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCAGATAGTGTTCTACCA-TCTTC 466343 Query 131085 TAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGT 131144 || || || || || | ||||| | || || || ||||| || |||||||| || | Sbjct 466342 TAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGAGGAATACCTTCTTTATCT-T 466284 Query 131145 GATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTT 131203 || ||| |||| | | | || | ||||| | | ||| | || | || | |||| Sbjct 466283 GAATTTTAGCTTTAACATTTTCAATGGTATCAGATGGCTCAACATCAAGAGTGATTGTTT 466224 Query 131204 TACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | ||||||| ||||||||||||||||||||| Sbjct 466223 TCCCGGTTAAAGTTTTTACGAAAATCTGCAT 466193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012569893760