Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq6 145 7e-30 seq11 111 1e-19 >seq6 Length=916956 Score = 145 bits (160), Expect = 7e-30 Identities = 172/230 (75%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || ||||| ||||| ||||| ||| | ||||| | || || ||| | ||| Sbjct 466193 ATGCAGATTTTCGTAAAAACTTTAACCGGGAAAACAATCACTCTTGATGTTGAGCCATCT 466252 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || || | || |||| |||| ||| || |||||||| ||||| ||||| Sbjct 466253 GATACCATTGAA--AATGTTAAAGCTAAAATTCAA-GATAAAGAAGGTATTCCTCCTGAT 466309 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | ||||||||||| |||||||||||||||| | | || | || ||| Sbjct 466310 CAACAAAGATTAATTTTTGCCGGAAAACAATTAGAAGATGGTAGAACACTATCTGACTAC 466369 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || |||||||||||||| || |||| ||||| |||| |||||||||| Sbjct 466370 AACATTCAAAAAGAATCGACTTTACACTTAGTTTTAAGATTAAGAGGAGG 466419 Score = 132 bits (146), Expect = 4e-26 Identities = 169/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || ||||| ||||| ||||| ||| | || || | || || || | ||| Sbjct 465965 ATGCAGATTTTCGTAAAAACTTTAACCGGGAAAACAATTACTCTTGATGTTGAACCATCT 466024 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || ||||| || | || |||| |||| ||| || |||||||| ||||||||||| Sbjct 466025 GATACTATTGAA--AATGTTAAAGCTAAAATTCAA-GATAAAGAAGGTATTCCACCTGAT 466081 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 ||||| | | ||||| || || ||||||||||| |||| | || | |||||| Sbjct 466082 CAACAAAGATTAATTTTCGCTGGAAAACAATTAGAGGATGGAAGAACACTATCTGATTAC 466141 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || |||||||||||||| || |||| ||||| |||| |||||||||| Sbjct 466142 AACATTCAAAAAGAATCTACCTTACACTTAGTTTTAAGATTAAGAGGAGG 466191 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || ||||| || || ||||| ||| | || || | || || || | || Sbjct 466421 ATGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATTACTCTTGATGTTGAACCATCA 466480 Query 25059 GACACTATCGAGT-CACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||| || | | |||| |||| ||| || |||||||| || |||||||| || Sbjct 466481 GATACTATTGAAAACGTTAAAGCCAAAATTCAA-GATAAAGAAGGTATCCCACCTGATCA 466539 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | ||||| || || |||||||||||||| | | | || | || || || Sbjct 466540 ACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGACGGTAGAACATTATCTGACTATAA 466599 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||||||||||| || |||||||||| |||| |||||||||| Sbjct 466600 CATTCAAAAAGAATCTACCTTACATTTAGTTTTAAGATTAAGAGGAGG 466647 Score = 98.7 bits (108), Expect = 9e-16 Identities = 112/149 (75%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 25077 AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCC 25136 |||| |||| ||| || |||||||| || |||||||| ||||| | | |||||||| Sbjct 465816 AAGCTAAAATTCAA-GATAAAGAAGGTATCCCACCTGATCAACAAAGATTAATTTTTGCT 465874 Query 25137 GGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACG 25196 || || ||||||||||||| | || | || || || |||||||||||||| || Sbjct 465875 GGAAAGCAATTAGAAGATGGAAGAACATTATCTGACTATAACATTCAAAAAGAATCTACC 465934 Query 25197 CTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||| ||||| |||| |||||||||| Sbjct 465935 TTACACTTAGTTTTAAGATTAAGAGGAGG 465963 >seq11 Length=1720574 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| |||||||| || || ||||| ||| | ||||| | || || || | || Sbjct 1496632 AATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCATC 1496573 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||| || || || | || ||||||||| || || |||||||| ||||| ||||| Sbjct 1496572 TGATACAATTGAA--AATGTTAAAGCAAAAATCCAA-GATAAAGAAGGAATTCCCCCTGA 1496516 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||| | | ||||| || || |||||||||||||||| | || | || || Sbjct 1496515 TCAACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGAAGAACATTATCTGACTA 1496456 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGT 25207 || ||||||||||| || || ||||||| || Sbjct 1496455 TAACATTCAAAAAGAGTCAACCTTACATTTGGT 1496423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327794033785