Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq10 230 3e-55 >seq10 Length=1634725 Score = 230 bits (254), Expect = 3e-55 Identities = 583/867 (67%), Gaps = 25/867 (3%) Strand=Plus/Minus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||||||||| ||||||| || || ||||| | ||||||||||||||||| ||||||| Sbjct 1455793 CATAACACCTGATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTG 1455734 Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907 |||||||| | | || | | | | |||||| || | | || ||||| | | | Sbjct 1455733 TAAAGATATTAAGTCCATCCAACTAAATGGATTTTTTGAATGGAAA-ACTTTGGAGCAAC 1455675 Query 92908 CAACTCGTAC-AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCAC-AA 92965 | | | | | ||||||| |||||| |||||||| ||||| |||||||| || || || Sbjct 1455674 CTAAACATTCTAATAATCGATCAGCAACAAATTCAATGTATTGAGACAT-AAGTCTTGAA 1455616 Query 92966 TTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAA--ATCTTTCTCGATTACAA 93023 |||||||| | | | ||||| || || | || |||||||| | | ||| Sbjct 1455615 TTCATTCCAATTAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCT--ACTTCAA 1455558 Query 93024 CGGCTTCTTTCA--AGATTTCTATTACTCTACTATTTGGTGGTTT-TTGTACGACATAAT 93080 | |||||||| | | |||| | | || || | |||| ||| || | | ||| | Sbjct 1455557 CTGCTTCTTTAACTATATTTTGAACAACCT-CT-TCTGGTAATTTATTTTCCAACA-AGC 1455501 Query 93081 TGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGC 93140 | || ||||| || ||| || || ||||| ||||| |||| ||||| ||||| | Sbjct 1455500 TATAAATTAAACAATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTAC 1455441 Query 93141 TGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTAC 93200 | ||||||||||| |||| | |||| || | ||||||||||| | |||||| | Sbjct 1455440 TAAATGTTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTC 1455381 Query 93201 CAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGG 93260 || ||| ||||| ||||| || |||| || ||||| | ||| |||||| | | Sbjct 1455380 CACTAAATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAA---GAGT 1455324 Query 93261 AATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTT 93320 || | |||||||| ||||| ||||| || || || |||| ||| Sbjct 1455323 TCGTATCATTTATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTT 1455264 Query 93321 CGATAGCGTTAAAT--AGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAA 93378 | ||||| | |||| | |||||| ||| | | ||| | || || |||| ||||| Sbjct 1455263 CAATAGCATGAAATAAATTTAATCT--CTCTTTCTCATCCCTAATATAATTATCAATTAA 1455206 Query 93379 CAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCT 93438 | | ||| ||||||| || | ||| || | || ||||| || | || || | | Sbjct 1455205 TAAACTATAGGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTT 1455146 Query 93439 AGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTA-CGAGATTTTCATTGACTATAC 93497 ||||| | || || |||||| ||||| | ||| | | |||||| ||||| | Sbjct 1455145 GGCTTCAATTATTTGTACTTCTCTTAAAAAT-TTACTAGCTAAATTTTCTAATACTATTC 1455087 Query 93498 CATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAA 93557 |||| ||||||||||| || | | ||| |||||||||||||| |||| | || | Sbjct 1455086 CATCACTAGCTGCAAAAAATGCTAGCACATGTTTTATAAAATGTTTTTCATTTACATTTA 1455027 Query 93558 GCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATG 93617 || || | || | ||| |||| | ||| | |||||| |||||||||| || | Sbjct 1455026 ATTTTTCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGG 1454967 Query 93618 CTTCTGCTTTTTTGTACATATCCCATA 93644 | || |||||||| || | || ||||| Sbjct 1454966 CCTCAGCTTTTTTATAAAAATTCCATA 1454940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860528530360