Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq6 172 5e-38 seq11 141 8e-29 >seq6 Length=916956 Score = 172 bits (190), Expect = 5e-38 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || |||||||||||||| ||||| | |||||||| || ||| | | Sbjct 465965 ATGCAGATTTTCGTAAAAACTTTAACCGGGAAAACAATTACTCTTGATGTTGAACCATCT 466024 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||||||||| || || ||||||||||| |||||| Sbjct 466025 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCTGATCAA 466084 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || || || || ||||| ||||||||| | || | || ||||||||| Sbjct 466085 CAAAGATTAATTTTCGCTGGAAAACAATTAGAGGATGGAAGAACACTATCTGATTACAAC 466144 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||||||||| ||| |||| |||||||| |||| | |||||| Sbjct 466145 ATTCAAAAAGAATCTACCTTACACTTAGTTTTAAGATTAAGAGGAGGT 466192 Score = 168 bits (186), Expect = 6e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || |||||||||||||| ||||| |||||||||| || || | | Sbjct 466193 ATGCAGATTTTCGTAAAAACTTTAACCGGGAAAACAATCACTCTTGATGTTGAGCCATCT 466252 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | ||| ||||||||||| || || |||||||| || |||||| Sbjct 466253 GATACCATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCTGATCAA 466312 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || |||||||| ||||| ||||| ||| | || | || || |||||| Sbjct 466313 CAAAGATTAATTTTTGCCGGAAAACAATTAGAAGATGGTAGAACACTATCTGACTACAAC 466372 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||||||||| || |||| |||||||| |||| | |||||| Sbjct 466373 ATTCAAAAAGAATCGACTTTACACTTAGTTTTAAGATTAAGAGGAGGT 466420 Score = 152 bits (168), Expect = 4e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| |||||||| ||||| | |||||||| || ||| | | Sbjct 466421 ATGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATTACTCTTGATGTTGAACCATCA 466480 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | | ||| ||||||||||| || || ||||| ||||| |||||| Sbjct 466481 GATACTATTGAAAACGTTAAAGCCAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAA 466540 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || || || || ||||| ||||| || | || | || || || ||| Sbjct 466541 CAAAGATTAATTTTCGCTGGAAAACAATTAGAAGACGGTAGAACATTATCTGACTATAAC 466600 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTT 22447 |||||||||||||| ||| ||||||||||||| |||| | ||||||| Sbjct 466601 ATTCAAAAAGAATCTACCTTACATTTAGTTTTAAGATTAAGAGGAGGTT 466649 Score = 120 bits (132), Expect = 3e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 22246 GGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAA 22305 || ||||| | || ||||| || || | |||||||| | || || | ||| ||| Sbjct 465764 GGAAAAACTATAACCCTTGATGTTGAGCCATCCGATACCATTGAAAATGTTAAAGCTAAA 465823 Query 22306 ATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAG 22365 |||||||| || || ||||| ||||| ||||||||| | | || ||||| || || || Sbjct 465824 ATTCAAGATAAAGAAGGTATCCCACCTGATCAACAAAGATTAATTTTTGCTGGAAAGCAA 465883 Query 22366 TTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTA 22425 ||||| ||| | || | || || || ||||||||||||||||| ||| |||| ||| Sbjct 465884 TTAGAAGATGGAAGAACATTATCTGACTATAACATTCAAAAAGAATCTACCTTACACTTA 465943 Query 22426 GTTTTGCGATTGCGCGGAGGT 22446 ||||| |||| | |||||| Sbjct 465944 GTTTTAAGATTAAGAGGAGGT 465964 >seq11 Length=1720574 Score = 141 bits (156), Expect = 8e-29 Identities = 167/226 (74%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 22202 TTTATACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTC 22261 ||| ||| ||| || |||||||| ||||| ||||| |||||||| ||||| |||||| Sbjct 1496648 TTTTTACGTTTACGAAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTC 1496589 Query 22262 TTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGG 22321 |||| || ||| | | ||||| | || || | ||| |||||| ||||| || || | Sbjct 1496588 TTGATGTTGAACCATCTGATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAG 1496529 Query 22322 GTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCA 22381 | ||||| || ||||||||| | | || || || || ||||| ||||| ||| | | Sbjct 1496528 GAATTCCCCCTGATCAACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGAAGAA 1496469 Query 22382 CCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGT 22427 | | || || || |||||||||||||| || ||| ||||||| || Sbjct 1496468 CATTATCTGACTATAACATTCAAAAAGAGTCAACCTTACATTTGGT 1496423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727800498035