Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq11 141 2e-28 seq6 140 6e-28 >seq11 Length=1720574 Score = 141 bits (156), Expect = 2e-28 Identities = 158/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 68252 TACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTC 68311 |||||| |||| || ||||||||||| |||||||| || || | ||| || |||||||| Sbjct 1496422 TACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTC 1496481 Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371 ||| || || || ||||| || | ||||||||| || || ||||| ||||| || ||||| Sbjct 1496482 TAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTG 1496541 Query 68372 AATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTT 68431 || ||||| || || || || || || | || ||| || || | ||||| ||||| Sbjct 1496542 GATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTT 1496601 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||| || | || || || || || |||||| Sbjct 1496602 TCCGGTTAATGTTTTTACAAAGATTTGCATT 1496632 >seq6 Length=916956 Score = 140 bits (154), Expect = 6e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 68250 AATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309 || || ||||||| || || |||||||| ||||| || || || ||||| || |||||| Sbjct 466404 AAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCAGATAGTGTTCTACCATCT 466345 Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369 ||||| || || ||||| || || | ||||||||| || || ||||| ||||| || ||| Sbjct 466344 TCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGAGGAATACCTTCTTTATCT 466285 Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 ||||| || || || || || ||||| || | || || || || | ||||| ||| Sbjct 466284 TGAATTTTAGCTTTAACATTTTCAATGGTATCAGATGGCTCAACATCAAGAGTGATTGTT 466225 Query 68430 TTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || | || || ||||| |||||||| Sbjct 466224 TTCCCGGTTAAAGTTTTTACGAAAATCTGCAT 466193 Score = 127 bits (140), Expect = 4e-24 Identities = 139/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 68250 AATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCT 68309 || || ||||||| || || |||||||| |||||||| || || | ||| || |||||| Sbjct 465948 AAAACTAAGTGTAAGGTAGATTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCT 465889 Query 68310 TCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCT 68369 ||||| ||||| || || || || | ||||||||| || ||||| || ||||| || ||| Sbjct 465888 TCTAATTGCTTTCCAGCAAAAATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTATCT 465829 Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 ||||| || || || || || ||||| || | || || || || | ||| || ||| Sbjct 465828 TGAATTTTAGCTTTAACATTTTCAATGGTATCGGATGGCTCAACATCAAGGGTTATAGTT 465769 Query 68430 TTTCC 68434 ||||| Sbjct 465768 TTTCC 465764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621950709080