Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq6 125 6e-24 seq11 91.5 1e-13 >seq6 Length=916956 Score = 125 bits (138), Expect = 6e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || ||| |||||||| |||| |||||||||||||||||||||||||| Sbjct 466194 ATACCTCCTCTTAATCTTAAAACTAAGTGTAAGGTAGATTCTTTTTGAATGTTGTAATCA 466135 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | ||| || | |||||| |||||| | || | | ||||| || || Sbjct 466134 GATAGTGTTCTTCCATCCTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGT 466075 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 ||||| |||||||| || ||| ||| | |||| | | ||||| || || | | ||| Sbjct 466074 GGAATACCTTCTTTATCTTGAAT-TTTAGCTTTAACATTTTCAATAGTATCAGATGGTTC 466016 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| ||||| | ||||||||| ||||||||||| Sbjct 466015 AACATCAAGAGTAATTGTTTTCCCGGTTAAAGTTTTTACGAAAATCTGCAT 465965 Score = 122 bits (134), Expect = 7e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || ||| |||||||| |||| || |||||||||||||||||||| || Sbjct 466422 ATACCTCCTCTTAATCTTAAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCA 466363 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | | |||||| | |||||| || || | || | | ||||| || ||| Sbjct 466362 GATAGTGTTCTACCATCTTCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGA 466303 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTC 114331 ||||| |||||||| || ||| ||| | |||| | | ||||| ||| || | | || Sbjct 466302 GGAATACCTTCTTTATCTTGAAT-TTTAGCTTTAACATTTTCAATGGTATCAGATGGCTC 466244 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| ||||| | ||||||||| ||||||||||| Sbjct 466243 AACATCAAGAGTGATTGTTTTCCCGGTTAAAGTTTTTACGAAAATCTGCAT 466193 Score = 113 bits (124), Expect = 4e-20 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC-GC 114213 ||| || | || ||| ||||||||||||| |||||||||||||||||||| || || | Sbjct 466648 ACCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATGTTATAGTCAGA 466589 Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273 | || || | | ||||| | |||||| |||||| | || | | ||||| || || | Sbjct 466588 TAAT-GTTCTACCGTCTTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTG 466530 Query 114274 GAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCG 114332 | || |||||||| || ||| ||| | |||| | | ||||| || || | | ||| Sbjct 466529 GGATACCTTCTTTATCTTGAAT-TTTGGCTTTAACGTTTTCAATAGTATCTGATGGTTCA 466471 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | ||||| ||||| | |||||||| ||||| ||||| Sbjct 466470 ACATCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 466421 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC- 114211 ||||| || | || ||| |||||||| |||| |||||||||||||||||||| || || Sbjct 465966 ATACCTCCTCTTAATCTTAAAACTAAGTGTAAGGTAGATTCTTTTTGAATGTTATAGTCA 465907 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 | | || || | |||||| | ||| || ||||| | || | | ||||| || || Sbjct 465906 GATAAT-GTTCTTCCATCTTCTAATTGCTTTCCAGCAAAAATTAATCTTTGTTGATCAGG 465848 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATT 114330 || || |||||||| || ||| ||| | |||| | | ||||| ||| |||| | | Sbjct 465847 TGGGATACCTTCTTTATCTTGAAT-TTTAGCTTTAACATTTTCAATGGTATCGGATGGCT 465789 Query 114331 CGACGTCCACGGTCACCGTTTTGCC 114355 | || || | ||| | ||||| || Sbjct 465788 CAACATCAAGGGTTATAGTTTTTCC 465764 >seq11 Length=1720574 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTTC 114232 || ||||||| || || |||||||||||||| || || | | || || | |||||| Sbjct 1496423 ACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAAT-GTTCTTCCATCTTC 1496481 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 | |||||| |||||| | || | | ||||| || || ||||| |||||||| || Sbjct 1496482 TAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTG 1496541 Query 114293 AATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTT 114351 || ||||| |||| | | ||||| || || | | ||| || || | || | |||| Sbjct 1496542 GAT-TTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTT 1496600 Query 114352 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | ||||| | ||||||||||| || ||||| Sbjct 1496601 TTCCGGTTAATGTTTTTACAAAGATTTGCAT 1496631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420134200304868