Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq6 131 4e-25 seq11 122 2e-22 >seq6 Length=916956 Score = 131 bits (144), Expect = 4e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || |||||||| | | || | |||||||||||||||||||| ||||| Sbjct 466612 TTCTTTTTGAATGTTATAGTCAGATAATGTTCTACCGTCTTCTAATTGTTTTCCAGCGAA 466553 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | |||||| | |||||| ||||||||||| || ||||| ||||| ||||| Sbjct 466552 AATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTATCTTGAATTTTGGCTTTAACGTT 466493 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| ||| | ||| || || || || || || || ||||| | || || || Sbjct 466492 TTCAATAGTATCTGATGGTTCAACATCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTAC 466433 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 466432 GAAAATTTGCAT 466421 Score = 125 bits (138), Expect = 2e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || || || || | || || | ||| || |||||||||||||| ||||| Sbjct 466156 TTCTTTTTGAATGTTGTAATCAGATAGTGTTCTTCCATCCTCTAATTGTTTTCCAGCGAA 466097 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | |||||| | ||| || ||||||||||| || ||||| ||||| || || Sbjct 466096 AATTAATCTTTGTTGATCAGGTGGAATACCTTCTTTATCTTGAATTTTAGCTTTAACATT 466037 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| ||| | ||| || || || || || || |||||||| | ||| || || Sbjct 466036 TTCAATAGTATCAGATGGTTCAACATCAAGAGTAATTGTTTTCCCGGTTAAAGTTTTTAC 465977 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 465976 GAAAATCTGCAT 465965 Score = 116 bits (128), Expect = 9e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || || ||||| | || || | || ||||||||||||||||| || || Sbjct 466384 TTCTTTTTGAATGTTGTAGTCAGATAGTGTTCTACCATCTTCTAATTGTTTTCCGGCAAA 466325 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | |||||| | || || ||||||||||| || ||||| ||||| || || Sbjct 466324 AATTAATCTTTGTTGATCAGGAGGAATACCTTCTTTATCTTGAATTTTAGCTTTAACATT 466265 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | ||| | || || || || ||||| || |||||||| | ||| || || Sbjct 466264 TTCAATGGTATCAGATGGCTCAACATCAAGAGTGATTGTTTTCCCGGTTAAAGTTTTTAC 466205 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 466204 GAAAATCTGCAT 466193 Score = 96.9 bits (106), Expect = 8e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || |||||||| | | || | ||| ||||||||||| ||||| || || Sbjct 465928 TTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCTAATTGCTTTCCAGCAAA 465869 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | |||||| | |||||| ||||||||||| || ||||| ||||| || || Sbjct 465868 AATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTATCTTGAATTTTAGCTTTAACATT 465809 Query 288402 TTCTATAGAATCG 288414 ||| || | |||| Sbjct 465808 TTCAATGGTATCG 465796 >seq11 Length=1720574 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 |||||||| || |||||||| | | || | ||| ||||||||||||||||| ||||| Sbjct 1496441 TCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCTAATTGTTTTCCAGCGAAA 1496500 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || | | |||||| | || |||||||||||||| |||||||| ||||| || ||| Sbjct 1496501 ATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGGATTTTTGCTTTAACATTT 1496560 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | ||| || || || ||||| || || ||||| | || || || Sbjct 1496561 TCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGTTTTTACA 1496620 Query 288463 AATATCTGCATT 288474 || || |||||| Sbjct 1496621 AAGATTTGCATT 1496632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653810541442