Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq6 113 5e-20 seq11 95.1 1e-14 >seq6 Length=916956 Score = 113 bits (124), Expect = 5e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| | |||| || | ||||||||||||||||||||||| || | | || | Sbjct 466410 AATCTTAAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCAGATAGTGTTCTA 466351 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| | || || |||||| |||| | | || || || |||||||| |||||| Sbjct 466350 CCATCTTCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGAGGAATACCTTCT 466291 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACTG-TATCACCGGCGTCCACTTCTACAGT 64404 || ||||| ||||| |||||| | | || || ||||| | || || || | ||| Sbjct 466290 TTATCTTGAATTTTA-GCTTTAACATTTTCAATGGTATCAGATGGCTCAACATCAAGAGT 466232 Query 64405 TACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || || ||||| ||||||||||||||||| ||||| Sbjct 466231 GATTGTTTTCCCGGTTAAAGTTTTTACGAAAATCTGCAT 466193 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| | |||| || | || ||||||||||||||||||||||| | | || | Sbjct 466182 AATCTTAAAACTAAGTGTAAGGTAGATTCTTTTTGAATGTTGTAATCAGATAGTGTTCTT 466123 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | || || | || || || || |||| | | || || || || ||||| |||||| Sbjct 466122 CCATCCTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGGAATACCTTCT 466063 Query 64346 TTTTCTTGTATTTTTTGCTTTACAACCTCCACT-GTATCACCGGCGTCCACTTCTACAGT 64404 || ||||| ||||| |||||| | | || | |||||| | || || || | ||| Sbjct 466062 TTATCTTGAATTTTA-GCTTTAACATTTTCAATAGTATCAGATGGTTCAACATCAAGAGT 466004 Query 64405 TACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || || ||||| ||||||||||||||||| ||||| Sbjct 466003 AATTGTTTTCCCGGTTAAAGTTTTTACGAAAATCTGCAT 465965 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 ||||| | |||| ||| | || ||||||||||||||||| || || | | || | Sbjct 466638 AATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATGTTATAGTCAGATAATGTTCTA 466579 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 ||||||| | || || || || |||| | | || || || || || || |||||| Sbjct 466578 CCGTCTTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGGGATACCTTCT 466519 Query 64346 TTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGT 64404 || ||||| | |||| ||||| || || | ||||| | || || || | ||| Sbjct 466518 TTATCTTG-AATTTTGGCTTTAACGTTTTCAATAGTATCTGATGGTTCAACATCAAGAGT 466460 Query 64405 TACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || || ||||| || |||||||||||||||||||| Sbjct 466459 AATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 466421 >seq11 Length=1720574 Score = 95.1 bits (104), Expect = 1e-14 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || |||||||||||||| || || | | || | | ||||| | || || || Sbjct 1496435 GTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCTAATTGTTTTCCA 1496494 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || |||| | | || || || || |||||||||||||| ||||| | |||||||||| Sbjct 1496495 GCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGGA-TTTTTGCTTT 1496553 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 ||| || | ||||||| | || || || | ||| | || || ||||| || || Sbjct 1496554 AACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGT 1496613 Query 64426 TTTTACGAAAATTTGCATTTT 64446 |||||| || ||||||||||| Sbjct 1496614 TTTTACAAAGATTTGCATTTT 1496634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644556423160