Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq6 100 3e-16 >seq6 Length=916956 Score = 100 bits (110), Expect = 3e-16 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 138403 AAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAG--T 138460 |||||||| |||| | || || ||||||||||||||||| ||||| | | | Sbjct 466404 AAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCAG--ATAGTGTTCTACCAT 466347 Query 138461 CCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGT 138520 | || | |||||| |||| | | |||| | ||||| || ||||| ||||||||||| | Sbjct 466346 CTTCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGAGGAATACCTTCTTTAT 466287 Query 138521 CGGTGATTTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579 | ||| |||| | ||||| | ||| | ||| || | | ||| || || | || | Sbjct 466286 CT-TGAATTTTAGCTTTAACATTTTCAATGGTATCAGATGGCTCAACATCAAGAGTGATT 466228 Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || || | ||||||||| ||||||||||| Sbjct 466227 GTTTTCCCGGTTAAAGTTTTTACGAAAATCTGCAT 466193 Score = 82.4 bits (90), Expect = 8e-11 Identities = 161/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 138384 GCAGCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC 138443 ||| || |||| || | ||||||||||||| | | || || ||||||||||| ||||| Sbjct 466651 GCAACCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATGTTATAGTC 466592 Query 138444 -GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCG 138502 | | || || | ||| || | |||||| || | | |||| | ||||| || | Sbjct 466591 AGATAAT-GTTCTACCGTCTTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAG 466533 Query 138503 GAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGAC 138561 | || ||||||||||| || ||| |||| | ||||| | ||| | || || | | Sbjct 466532 GTGGGATACCTTCTTTATC-TTGAATTTTGGCTTTAACGTTTTCAATAGTATCTGATGGT 466474 Query 138562 TCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || || | || | ||||| || || | |||||||| ||||| ||||| Sbjct 466473 TCAACATCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 466421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262158072080