Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq6 145 5e-30 seq11 102 6e-17 >seq6 Length=916956 Score = 145 bits (160), Expect = 5e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||||||||||||| || | |||||| |||||||| ||||||||||| Sbjct 466191 CCTCCTCTTAATCTTAAAACTAAGTGTAAGGTAGATTCTTTTTGAATGTTGTAATCAGAT 466132 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | || ||||||||||| |||||| | || || | ||||| || |||| Sbjct 466131 AGTGTTCTTCCATCCTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGGA 466072 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| || || |||||| ||| ||| |||| |||||||| ||| || Sbjct 466071 ATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGATGGTTCAACA 466012 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||||| ||||| || || | ||||||||| ||||| |||||| Sbjct 466011 TCAAGAGTAATTGTTTTCCCGGTTAAAGTTTTTACGAAAATCTGCATA 465964 Score = 143 bits (158), Expect = 2e-29 Identities = 171/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||||||||||||||||| | |||||| |||||||| ||||| || || | Sbjct 466647 CCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATGTTATAGTCA--G 466590 Query 15010 AGAAT--TCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| ||| |||||||||||||||| |||||| | || || | ||||| || || Sbjct 466589 ATAATGTTCTACCGTCTTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTG 466530 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||| || || ||||||| ||| || |||| |||||||| ||| | Sbjct 466529 GGATACCTTCTTTATCTTGAATTTTGGCTTTAACGTTTTCAATAGTATCTGATGGTTCAA 466470 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | ||||| ||||| || || | |||||||| |||||||||||| Sbjct 466469 CATCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCATA 466420 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||||||||||||| || | || || |||||||| |||||||| || Sbjct 466419 CCTCCTCTTAATCTTAAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCAGAT 466360 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || |||| | |||||||||||||| || || | || || | ||||| || ||| Sbjct 466359 AGTGTTCTACCATCTTCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGAGGA 466300 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||| || || |||||| ||| ||| |||| || ||||| || || Sbjct 466299 ATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATGGTATCAGATGGCTCAACA 466240 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | || || ||||| || || | ||||||||| ||||| |||||| Sbjct 466239 TCAAGAGTGATTGTTTTCCCGGTTAAAGTTTTTACGAAAATCTGCATA 466192 Score = 96.9 bits (106), Expect = 2e-15 Identities = 145/204 (71%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| |||||||||||||| || | |||||| |||||||| ||||| || || | Sbjct 465963 CCTCCTCTTAATCTTAAAACTAAGTGTAAGGTAGATTCTTTTTGAATGTTATAGTCA--G 465906 Query 15010 AGAAT--TCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| ||| | ||||||||||| || ||||| | || || | ||||| || || Sbjct 465905 ATAATGTTCTTCCATCTTCTAATTGCTTTCCAGCAAAAATTAATCTTTGTTGATCAGGTG 465846 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||| || || |||||| ||| ||| |||| || |||||| || | Sbjct 465845 GGATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATGGTATCGGATGGCTCAA 465786 Query 15128 CGTCTAAGGTAATGGTTTTACCTG 15151 | || | ||| || ||||| |||| Sbjct 465785 CATCAAGGGTTATAGTTTTTCCTG 465762 >seq11 Length=1720574 Score = 102 bits (112), Expect = 6e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAAT--TCTCGCGTCTT 15025 || ||||| | ||| || |||||||| ||||| || || || ||| ||| | |||| Sbjct 1496423 ACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCA--GATAATGTTCTTCCATCTT 1496480 Query 15026 CTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCAC 15085 |||||||||| |||||| | || || | ||||| || ||||||||||| || || Sbjct 1496481 CTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTT 1496540 Query 15086 AAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTT 15145 ||||| ||| ||| |||| || ||||| ||| || || | || || |||| Sbjct 1496541 GGATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTT 1496600 Query 15146 TACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 | || || | ||||||||||| |||||||| || Sbjct 1496601 TTCCGGTTAATGTTTTTACAAAGATTTGCATTTT 1496634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357391830127115