Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq6 84.2 2e-11 >seq6 Length=916956 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || | ||||| || || || |||| ||||| ||||||||||| |||||||| Sbjct 466191 CCTCCTCTTAATCTTAAAACTAAGTGTAAGGTAGATTCTTTTTGAATGTTGTAATCAGAT 466132 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | ||| |||| |||||||||||| | || |||| || ||||| || || Sbjct 466131 AGTGTTCTTCCATCCTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGGA 466072 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || || | | ||| ||| || || | | ||| | || || | || || Sbjct 466071 ATACCTTCTTTAT-CTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGATGGTTCAAC 466013 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||||| ||||| | ||||||||| ||||||||||| Sbjct 466012 ATCAAGAGTAATTGTTTTCCCGGTTAAAGTTTTTACGAAAATCTGCAT 465965 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || | ||||| || || || |||| || || ||||||||||| ||||| || Sbjct 466419 CCTCCTCTTAATCTTAAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCAGAT 466360 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | | ||| |||| |||||||| || | || |||| || ||||| ||||| Sbjct 466359 AGTGTTCTACCATCTTCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGAGGA 466300 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || || | | ||| ||| || || | | ||| | ||| || | ||| || Sbjct 466299 ATACCTTCTTTAT-CTTGAATTTTAGCTTTAACATTTTCAATGGTATCAGATGGCTCAAC 466241 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||||| ||||| | ||||||||| ||||||||||| Sbjct 466240 ATCAAGAGTGATTGTTTTCCCGGTTAAAGTTTTTACGAAAATCTGCAT 466193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500568193360