Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq11 89.7 1e-12 seq6 87.8 4e-12 >seq11 Length=1720574 Score = 89.7 bits (98), Expect = 1e-12 Identities = 144/204 (71%), Gaps = 5/204 (2%) Strand=Plus/Plus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 || ||||| ||||| | ||| ||||||| || || ||||||||||| | || ||||| Sbjct 1496435 GTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCTAATTGTTTTCCA 1496494 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGC-TT 199551 ||||| || | | || || || || |||||||||| || || || |||||| || Sbjct 1496495 GCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGGAT-TTTTGCTTT 1496553 Query 199552 CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGT 199611 || ||| | || || | || ||| ||||| | ||||| || || || || | || Sbjct 1496554 AACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGT 1496613 Query 199612 TTTCACAAAAATTTGGTACATTTT 199635 ||| ||||| ||||| |||||| Sbjct 1496614 TTTTACAAAGATTTG---CATTTT 1496634 >seq6 Length=916956 Score = 87.8 bits (96), Expect = 4e-12 Identities = 142/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| | |||||| || ||||| | ||||||||||| | || || |||||||| | || Sbjct 466396 GTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCAGATAGTGTTCTACCATCTTCTAATTG 466337 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 |||||||| || || | | || || || ||| ||| |||||| || ||||| || Sbjct 466336 TTTTCCGGCAAAAATTAATCTTTGTTGATCAGGAGGAATACCTTCTTTATCTTGAAT-TT 466278 Query 199546 TTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCG 199604 | || || || ||| | ||| || | || || ||||| | ||||| || || || | Sbjct 466277 TAGCTTTAACATTTTCAATGGTATCAGATGGCTCAACATCAAGAGTGATTGTTTTCCCGG 466218 Query 199605 TGAGAGTTTTCACAAAAATTTG 199626 | | |||||| || ||||| || Sbjct 466217 TTAAAGTTTTTACGAAAATCTG 466196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178921010907613