Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq6 86.0 4e-12 >seq6 Length=916956 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||||||||| || || ||||| | | | | |||| || |||||||| || | || Sbjct 466156 TTCTTTTTGAATGTTGTAATCAGATAGTGTTCTTCCATCCTCTAATTGTTTTCCAGCGAA 466097 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647 |||||| | || ||||| | || | |||||||| || ||||| ||||| | Sbjct 466096 AATTAATCTTTGTTGATCAGGTGGAATACCTTCTTTATCTTGAATTTTAGCTTTAACATT 466037 Query 39648 CGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | || || | ||| || || | |||||||||||| || |||||||||||||| Sbjct 466036 TTCAATAGTATCAGATGGTTCAACATCAAGAGTAATTGTTTTCCCGGTTAAAGTTTTTAC 465977 Query 39708 GAAGATCTGCAT 39719 ||| |||||||| Sbjct 465976 GAAAATCTGCAT 465965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347369434890887