Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq6 141 1e-28 >seq6 Length=916956 Score = 141 bits (156), Expect = 1e-28 Identities = 716/1129 (63%), Gaps = 14/1129 (1%) Strand=Plus/Plus Query 111870 CATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATT 111929 || ||| | ||||| | || ||| || ||||| || |||||| |||| ||||| | Sbjct 508058 CAAGATATTAGAGCTCAAAATTCTTACATCAGAGGAACTAATGGTATATCAAATGGTTTA 508117 Query 111930 ATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGTC-- 111987 | || ||| | | || ||||| | ||||| | |||||| | |||| ||| | Sbjct 508118 GTCCCGATGTTAAGAGTTTTTAATGATACAGCAAGATATGTAGATCAAGGTGGAGGAAAA 508177 Query 111988 -GCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTT 112046 | || || ||| | || || ||| |||| |||||||| | ||||| | || || | Sbjct 508178 AGAAAAGGTTCTTTTGCTGTATATGTTGAACCATGGCATTCAGATATTTTTGAATTTTTA 508237 Query 112047 GAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTC 112106 || || | || || ||| | || || | | || ||| | || | ||| | Sbjct 508238 GATTTAAGAAAAAATCATGGTAAAGAAGAATTGAGAGCTCGTGATTTATTTTATGCTATT 508297 Query 112107 TGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGT 112166 ||| | || ||| | || ||||| ||||| |||| | | || ||| || | | || Sbjct 508298 TGGGTACCTGATTTATTTATGAAAAGAGTAAAGGAAAATAAGAACTGGACTTTAATGTGC 508357 Query 112167 CCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACA 112226 || || | || || | || || |||||| || |||||| | || ||| Sbjct 508358 CCTAACGAATGTCCAGGCTTAAGTGAAACCTGGGGTGAAGAATTTGAAAAATTATATACA 508417 Query 112227 AAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCT 112286 || ||||| ||||||| || | | || | | || ||| | ||| ||| Sbjct 508418 AAATACGAAGAAGAAAATCTTGGAAAAAAAACAATTCTTGCACAAGATTTATGGTTTGCT 508477 Query 112287 ATTCT-CAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAA 112345 || | ||| | |||| || |||||| |||||||||| | || ||||| || ||||| Sbjct 508478 ATATTACAAAGC-CAAATAGAAACTGGTGTACCATATATGTTATATAAAGATGCATGTAA 508536 Query 112346 C-CAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAA 112404 | ||| | |||||||| ||||| || || || | || | ||| |||| Sbjct 508537 TTCTAAATCG-AATCAAAAAAATTTAGGAACAATTAAATGCAGTAATTTATGTTGTGAAA 508595 Query 112405 TCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCC 112464 | | |||| |||| ||||| ||||| ||||| | || || || || | Sbjct 508596 TTATTGAATATACATCACCTGATGAAGTAGCTGTTTGTAATTTAGCTTCCATTGCATTAT 508655 Query 112465 CCAAGTATGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGA 112524 ||| | ||| ||| ||| | ||| |||| ||| | ||||| | | || |||| | Sbjct 508656 GCAAATTTGTTGATAGAGAAAAAAAAGAATTTAATTTTAAAAAATTATATGATATTACTA 508715 Query 112525 AAACTGTCACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTG 112584 ||| | | || | ||| || | | | ||||||| ||||||| ||| || ||| | | Sbjct 508716 AAATTATTACTAGAAATTTAGATAAAATTATTGAAAGAAATTATTATCCAGTTAAAGAAG 508775 Query 112585 CTCGTAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATG 112644 | | ||| |||| ||||| | || ||||| | || || ||||| | || ||| Sbjct 508776 CGGAAAGATCAAATAAAAGACATAGACCTATTGGAATAGGAGTACAAGGATTAGCAGATA 508835 Query 112645 TATTCATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTA 112704 ||| || |||| | | ||| ||| || || ||||| || ||| | ||| | | Sbjct 508836 CATTTATGCTTTTAAGATATCCATATGAATCTGAAGAAGCTAAAGAATTAAATAGAAGAA 508895 Query 112705 TATTTGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATG 112764 ||||||| || |||||| | || ||| | || | | || |||||| | || || Sbjct 508896 TATTTGAAACTATGTATTATGCTGCTTTAGAAATGTCTGTTGAATTGGCACAAGTAAGTG 508955 Query 112765 GTCCATATGAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGT 112824 | ||||||||| | | | | ||| |||||| ||||| | | ||||||||||||| Sbjct 508956 GACCATATGAATCATATCAAGGTAGTCCAGCAAGCCAAGGAATATTACAATTTGATATGT 509015 Query 112825 GGGAAGGTGAGACCA-AGCTTCACTA---CGACTGGGACGCTCTCAAGGAACGCATCAAG 112880 |||| | | | | | | | || || ||||| | | || || | ||| Sbjct 509016 -GGAATGCAAAAGTAGATAATAAATATTGGGATTGGGA-TTTATTAAAAAAAAAAATAAG 509073 Query 112881 GAGA-AGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACA 112939 | | | || | | || |||| | | ||||| ||||||||||| || || |||| Sbjct 509074 TAAACACGGATTAAGAAATTCTCTTCTTTTAGCACCTATGCCAACAGCTTCAACGTCACA 509133 Query 112940 AATCTTGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTAT 112988 ||| || || |||||||||| ||||||||| || || | ||||| ||| Sbjct 509134 AATTTTAGGAAATAATGAATCCTTTGAACCATATACAAGTAACATTTAT 509182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742097388080