Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 1e-15 >seq6 Length=916956 Score = 98.7 bits (108), Expect = 1e-15 Identities = 426/668 (64%), Gaps = 7/668 (1%) Strand=Plus/Minus Query 110374 CCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTA 110433 || || || || ||||||||||| || || |||||||| ||||| | ||| ||||| | Sbjct 508563 CCTAAATTTTTTTGATTCGATTTAGAATTACATGCATCTTTATATAACATATATGGTACA 508504 Query 110434 CCAGTTTCCGTCTGTGACTTGAGA-ATGGCCTTCCATACATCGGCGGCGGGGACAGTTGC 110492 |||||||| | || | ||| | || || ||||| ||| || | | ||| Sbjct 508503 CCAGTTTCTATTTG-GCTTTGTAATATAGCAAACCATAAATCTTGTGCAAGAATTGTTTT 508445 Query 110493 GTTAGCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACAC 110552 || | ||| ||| || ||||| || || || || | |||||||| | || | Sbjct 508444 TTTTCCAAGATTTTCTTCTTCGTATTTTGTATATAATTTTTCAAATTCTTCACCCCAGGT 508385 Query 110553 ATCAGAAAGACCCTTCGCCTT-GTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAA 110611 ||| | | ||| | || || || || | | | ||| || | |||| | Sbjct 508384 TTCACTTA-AGCCTGGACATTCGTTAGGGCACATTAAAGTCCAGTTCTTATTTTCCTTTA 508326 Query 110612 CCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCT 110671 | || ||||| || | ||||| | ||| || || | || | ||||| | | Sbjct 508325 CTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAATAAATCACGAGCTCTCAATT 508266 Query 110672 CTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTT 110731 |||| | ||| || || | || || ||||| || | ||||| || |||||||||| Sbjct 508265 CTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATATCTGAATGCCATGGTT 508206 Query 110732 CGAGATAGACAGCGATGGATCCCTTAC---GACGACCCGCCTGGTTAACATAGCGTGCTG 110788 | | ||| ||||| | || || || | | || | || | ||||| | ||||| Sbjct 508205 CAACATATACAGCAAAAGAACCTTTTCTTTTTCCTCCACCTTGATCTACATATCTTGCTG 508146 Query 110789 TGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAA 110848 | |||| || || || | ||| || | | |||| ||| |||||| || || || | Sbjct 508145 TATCATTAAAAACTCTTAACATCGGGACTAAACCATTTGATATACCATTAGTTCCTCTGA 508086 Query 110849 TTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTAC 110908 | || || | || | ||| || || | | || ||| ||||| || || |||| Sbjct 508085 TGTAAGAATTTTGAGCTCTAATATCTTGTACAGCCACACCTATACCTCCTGCTGTTTTAC 508026 Query 110909 TAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGG 110968 |||| |||||| | | | ||| || | ||||| || || ||||| | || | | Sbjct 508025 TAATCAATGCACATTGCTTTAATGTTTCAAATATACCTTCTATTGAATCAGATTTCATTG 507966 Query 110969 CAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTG 111028 | || |||||| |||||||| || || | || ||||||| ||| || | |||||| | Sbjct 507965 ATAATAAAAAGCATGAAGACATTTGGGGTCTTGGTGTTCCCGAATTAAATAATGTAGGAG 507906 Query 111029 TCGCATGA 111036 | |||||| Sbjct 507905 TAGCATGA 507898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975712874200