Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq6 118 1e-21 >seq6 Length=916956 Score = 118 bits (130), Expect = 1e-21 Identities = 334/502 (67%), Gaps = 11/502 (2%) Strand=Plus/Minus Query 105934 ATAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 105993 ||| ||||| | || || ||||||||| |||||||||| || || ||||||| || || Sbjct 509182 ATAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGACGTTGA 509123 Query 105994 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCT-TTTCCTTGATGCGTT 106052 ||||||||||| ||||| | | |||| || | | || | ||| ||| | || Sbjct 509122 AGCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCGTGTTTACTTATTTTTTT 509063 Query 106053 CCTTGAGAACATCCCAGTCG---TAGTTGAGCT-TGGTTTCACCTTCCCACATATCAAAT 106108 || | || |||||| || || || | | ||| | |||| ||||||||||| Sbjct 509062 TTTTAATAA-ATCCCAATCCCAATATTTATTATCTACTTTTGCATTCC-ACATATCAAAT 509005 Query 106109 TGAAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCA 106168 || | | |||||| | ||| ||| | | ||| ||||| | || ||| Sbjct 509004 TGTAATATTCCTTGGCTTGCTGGACTACCTTGATATGATTCATATGGTCCACTTACTTGT 508945 Query 106169 GCCAATTCA-CAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATT 106227 ||||||||| ||| | || | | || | |||||| |||||||| || | ||| Sbjct 508944 GCCAATTCAACAGA-CATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCTATT 508886 Query 106228 CATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAG 106287 | || || ||||| || || ||| ||| || | | | |||||| ||| || | Sbjct 508885 TAATTCTTTAGCTTCTTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAA 508826 Query 106288 ACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA-CTTTCGCGCAGTCTCAA 106346 ||||| || || | ||||||||||| |||| |||| || ||||| ||| | || Sbjct 508825 TCCTTGTACTCCTATTCCAATAGGTCTATGTCTTTTATTTGATCTTTC-CGCTTCTTTAA 508767 Query 106347 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTT 106406 | |||||| ||||||| ||||| | | | || |||| | |||| ||| || || || | Sbjct 508766 CTGGATAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATAT 508707 Query 106407 CATGAAGTTTTTCATAATCAAA 106428 ||| | ||||| | ||| ||| Sbjct 508706 CATATAATTTTTTAAAATTAAA 508685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980512384360