Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq7 125 9e-24 seq3 122 1e-22 seq6 104 3e-17 >seq7 Length=1169068 Score = 125 bits (138), Expect = 9e-24 Identities = 424/651 (65%), Gaps = 16/651 (2%) Strand=Plus/Plus Query 104796 AATTTGATTTAAGTGAAGGAATTGTACCATTGCTTACAACaaaaaaaaTAGTT-TACGCC 104854 ||||| ||||||||||| ||| | ||||| | |||||||||||| || || || | Sbjct 995233 AATTTAATTTAAGTGAAT--ATTTT-CCATTATTAACAACAAAAAAATTATTTGTAAGAG 995289 Query 104855 AATATTCTTAAAGAATTATTATGGGTGATGAAAGGTTTAACAAATTCTAACTTGTTAAAT 104914 ||| || |||| || ||||| | || | || ||||||| || ||| Sbjct 995290 G-TATCATTGAAGAGTTGCTATGGTTTATAAGGGGAGAAACAAATGGAAATACATTATTA 995348 Query 104915 GAAATTGGTGTTAAAGTATGGAATGATAATGGTTCACGTAAGTTTTTAGATTCTTGTGGA 104974 |||| || | | ||||| | | |||||| || | ||||||||||| | | | Sbjct 995349 GAAAAAAACGTAAGAATATGGGAAGCTAATGGGACAAGAGAGTTTTTAGATAATAGGAAA 995408 Query 104975 TTTCACTTTCGAAAAGAAGGTGAT---TTAGGACCAATTTATGGATTTCAATGGAGACAT 105031 || |||| | ||||| | || ||||| |||||||| |||||||||||||| || Sbjct 995409 TTA---TTTCATAGAGAAGTTAATGACTTAGGTCCAATTTACGGATTTCAATGGAGGCAC 995465 Query 105032 GCTGGAGCTCAATATATCGACTGTG-ATACCGACTATACCGGCCAAGGTATAGACCAATT 105090 ||| ||| |||||| || | || || | || |||| | ||||| | || || || Sbjct 995466 TTTGGTGCTGAATATACAGA-TATGCATGCTGATTATAAAGATAAAGGTGTTGATCAGTT 995524 Query 105091 AAGTCAAGTTATAGAAACTATAAAAAATAACCCCGGGTGTCGAAGAATAATTATAGATAG 105150 || | ||||| | || ||||| | || ||| || |||| ||| || | Sbjct 995525 AAAAAATATTATAAATTTAATTAAAAACGATCCGACATGTAGACGAATTATTTTATGTGC 995584 Query 105151 TTGGAATGTGTCACAATTATCAGATATGGCTCTTCCACCGTGTCATTGTTTGGTACAATT 105210 |||||||| | | ||| | ||||| | || || |||||| ||| ||||| Sbjct 995585 ATGGAATGTAAAAGATTTAGATCAAATGGCATTACCTCCTTGTCATATTTTATGTCAATT 995644 Query 105211 TTACATTAGAAATAAAATTTATTTAGATTGTCAATTGTATCAAAGATCTGCAGATTTAGG 105270 ||| || || || | ||| ||| |||||||||||||| |||||||| Sbjct 995645 TTATGTTTTTGATGGAA---AATTATCATGTATTATGTATCAAAGATCTTGTGATTTAGG 995701 Query 105271 ATTAGGTGTACCATATAATATTGGTTTCTATTCATTTTTGGTGTGTGTTCTCTCAAAATG 105330 | ||||| |||| ||||||| || |||||| | || | | | | || || Sbjct 995702 TCTTGGTGTTCCATTCAATATTGCTTCCTATTCTATATTTACATATATGATAGCACAAGT 995761 Query 105331 GTGTAATCTAACCCCCGGAAAATTTATTCATACTTTTGGAGATGTTCATGTATATTCTAA 105390 |||||| || || | ||||||| ||| || ||| ||| |||||| ||| ||| Sbjct 995762 ATGTAATTTACAACCAGCTGAATTTATACATGTATTGGGAAATGCTCATGTTTATAATAA 995821 Query 105391 CCATGTTGACCAATTAAAAATTCAATTAAACAGAAAACCTTACACCTTCCC 105441 |||||||| |||||| | || ||||| |||| ||| || | ||||| Sbjct 995822 TCATGTTGAAAGCTTAAAAGTCCAGTTAAATAGAACACCCTATCCTTTCCC 995872 >seq3 Length=624158 Score = 122 bits (134), Expect = 1e-22 Identities = 161/221 (73%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 126920 TACTGGAAGAAGGATAAAGAGTAAAATTTTTATAGGTCCAACATACTATCATCGTCTTAA 126979 || ||| |||| | |||| |||||| |||||||| ||||||| ||||| | | || Sbjct 500445 TAATGGTAGAATGCTAAAATCTAAAATATTTATAGGACCAACATTTTATCAAAGATTAAA 500504 Query 126980 ACATATGGTTAAAGATAAAATGCATGCTAGAAGTCATGGTCAAGTAAC-AACATTACATC 127038 ||||||||| |||||||||| ||||| |||||| || | |||| | |||||| Sbjct 500505 ACATATGGTGGAAGATAAAATACATGCCAGAAGTAGAGGACCTCTAACTATGATTACA-A 500563 Query 127039 GTCAACCAAACTGTGGTCGTTCCCAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAG 127098 | ||||||| || | || || |||||| |||||||||||||||||||||| || Sbjct 500564 GACAACCAACAGAAGGAAGATCAAGAGATGGTGGTTTAAGATTTGGAGAAATGGAAAGAG 500623 Query 127099 ATTGTATTTTGGTTCATGGAGCCACACAATTTTTAAATGAA 127139 ||||||| | ||||||| | | || | ||||| ||| Sbjct 500624 ATTGTATGATATCTCATGGATCTGCTAAAATGTTAAAGGAA 500664 Score = 91.5 bits (100), Expect = 2e-13 Identities = 125/171 (73%), Gaps = 8/171 (5%) Strand=Plus/Plus Query 126100 TAAATTATCCTCAAAAACCACTTGT---TACAACCGATATTGCAGAAT-TTAATGGTCTA 126155 || ||||||| ||||||||| | || ||||| | || |||||| || | | || Sbjct 499265 TATATTATCCACAAAAACCATTAGTATGTACAAAAGCTA---CAGAATATTTACATTTTA 499321 Query 126156 AATGAATACCCCAATGGTATTAATGCAATTGTAGCAATCGCGTGTTACACTGGATACAAT 126215 || || | || ||| || ||||||||||||||||| |||||| || ||||||||| Sbjct 499322 AA-GATTTACCAGCTGGAATAAATGCAATTGTAGCAATTATGTGTTATACAGGATACAAT 499380 Query 126216 CAAGAAGATAGTGTTATTCTTAATAAAGCATCTATCGAAAGAGGTTTATTT 126266 |||||||||||| | || | ||| || |||| || || | || |||||| Sbjct 499381 CAAGAAGATAGTTTGATCATGAATCAATCATCCATTGATCGGGGGTTATTT 499431 >seq6 Length=916956 Score = 104 bits (114), Expect = 3e-17 Identities = 122/160 (76%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 126945 ATTTTTATAGGTCCAACATACTATCATCGTCTTAAACATATGGTTAAAGATAAAATGCAT 127004 |||||||| ||||||| ||| ||||| | |||||||||||| |||||||||| ||| Sbjct 263033 ATTTTTATGGGTCCAATATATTATCAGAAATTAAAACATATGGTTCAAGATAAAATTCAT 262974 Query 127005 GCTAGAAGTCATGGT-CAAGTAACAACATTACATCGTCAACCAAACTG-TGGTCGTTCCC 127062 |||||| || ||| | || | | |||| || ||||| ||||| ||||| || Sbjct 262973 GCTAGATCTCGAGGTCCTAGGCA-ATTATTAACACGACAACC-AACTGAAGGTCGATCAA 262916 Query 127063 AAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTG 127102 ||| || ||||||||| |||| |||||||||| |||||| Sbjct 262915 AAGAAGGAGGATTAAGACTTGGTGAAATGGAAAGAGATTG 262876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658402879028440