Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq6 520 1e-142 seq10 333 3e-86 >seq6 Length=916956 Score = 520 bits (576), Expect = 1e-142 Identities = 1139/1701 (67%), Gaps = 42/1701 (2%) Strand=Plus/Minus Query 47123 CTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTC 47182 ||| ||||| || ||| | |||||| |||||||| | |||| ||||| || || Sbjct 509419 CTGGTCAATGAAAATACCACGATCAGCAGCCATATCAATAATATTTTTTTGTTTGATTTC 509360 Query 47183 CCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGAGAT---TAGTATTTTGAATAGA 47239 ||| || |||||||| | | ||| | ||| || | | || ||| ||||| | Sbjct 509359 CCAAACGGTTTTATACAACTCTTTCAAGTCACTAGGTATTTCGCTAATATATTGAACA-- 509302 Query 47240 TCCTCCgttttctataatt--ttgttttttaat-tcatttgaccaaagttttcgttcagt 47296 | ||| || | |||| ||||| ||| || || | |||||| || ||| Sbjct 509301 -CTTCCATTATGGGCAATTAATTGTTGTTTCATATCTTCATCCCAAAGACCTCTATCAAA 509243 Query 47297 taatgtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCT 47356 | |||||| | |||||||||||||| ||||| ||| || || | | | Sbjct 509242 AAGATCTTTTAACAAATGAGGATTAACAACAAAGAATTCACCACTTAAAACACGTCTGTA 509183 Query 47357 ATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGA 47416 ||| || ||||||||||||||||| | |||||||||||||| |||||||| | ||||| Sbjct 509182 ATAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGACGTTGA 509123 Query 47417 TGCTGTAGGCATGGATGCAACTAATAAGCTA-TTTCTTACTCCATATTTTTGTATCTNNN 47475 ||||| ||||| | ||| | || ||| | ||||||| ||| | ||| ||| | Sbjct 509122 AGCTGTTGGCATAGGTGCTAA-AAGAAGAGAATTTCTTAATCCGTGTTTACTTATTTTTT 509064 Query 47476 NNNNNNNNNGTTTCCAATCCCAA-AGATCTGATGGAACAA--CATTCCAAAAATCATATT 47532 | |||||||||| | | | || | ||||||| | |||| ||| Sbjct 509063 TTTTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATT 509004 Query 47533 GAAGAATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAG 47592 | | ||||||| ||| ||| ||| | ||||| || ||| || || || || | Sbjct 509003 GTAATATTCCTTGGCTTGCTGGACTACCTTGATATGATTCATATGGTCCACTTACTTGTG 508944 Query 47593 CGAGTTCA-CA-ACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTT 47650 | | |||| || || | ||| || ||| |||||| || |||||||||||| || | || Sbjct 508943 CCAATTCAACAGACAT--TTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCTATT 508886 Query 47651 TAGATTCCTT-GCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCA 47709 || |||| || |||||| |||||| | ||||| ||||||||||| | Sbjct 508885 TA-ATTCTTTAGCTTCTTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTA 508827 Query 47710 ATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTGGTA 47769 ||||||| || || || ||||| |||||||| ||||||| || || |||||| | Sbjct 508826 ATCCTTGTACTCCTATTCCAATAGGTCTATGTCTTTTATTTGATCTTTCCGCTTCTTTAA 508767 Query 47770 ATGGATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAATTT 47829 |||||| | ||| | || |||||||||| || | ||| | Sbjct 508766 CTGGATAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATAT 508707 Query 47830 CTCTTAATTTATTAAAATCAAA--CTTGTTATT---TAT-AACAAACCTATTAAGTGCTA 47883 | |||||| ||||||| ||| ||| || || ||| |||||| | | ||| | Sbjct 508706 CATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAA 508647 Query 47884 TAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAGCAC 47943 | || |||| |||||| |||||||| |||| || ||||||| || |||||| || Sbjct 508646 TGGAAGCTAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAAC 508587 Query 47944 ATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT--ATTNNNNTTGTTACATGC 48001 ||| ||||| ||||| || || || ||||||| ||||| ||| | ||||||| Sbjct 508586 ATAAATTACTGCATTTAATTGTTCCTAAATTTTTTTGATTCGATTTAGAAT--TACATGC 508529 Query 48002 GTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCA 48061 || || || | |||| | ||| ||||||||||| || || | |||| || Sbjct 508528 ATCTTTATATAACATATATGGTACACCAGTTTCTATTTGGCTTTGTAATATAG-----CA 508474 Query 48062 AACAGTCCTAGCCTTTATAACAGCTCTAGCTTT------ATTATCATGTTCGTATTTAGT 48115 ||| | | | | | || | | | ||| ||| || | ||||||||| || Sbjct 508473 AACCATAA-ATCTTGTGCAAGAATTGTTTTTTTTCCAAGATTTTCTTCTTCGTATTTTGT 508415 Query 48116 ATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACA 48175 |||||| || |||||||| || || | | | ||| || |||||||| ||||| || Sbjct 508414 ATATAATTTTTCAAATTCTTCACCCCAGGTTTCACTTAAGCCTGGACATTCGTTAGGGCA 508355 Query 48176 CATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAG 48235 ||| || | ||| | || || | |||||||| ||||||||| ||| |||| ||||| Sbjct 508354 CATTAAAGTCCAGTTCTTATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAAT 508295 Query 48236 AGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAG 48295 ||| ||||||||| | || ||| | |||||| || ||| ||| || | | || | Sbjct 508294 AGCATAAAATAAATCACGAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAA 508235 Query 48296 AAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTT 48355 ||| || | ||||| | |||||||||||| | ||||| || | |||| || ||| Sbjct 508234 AAATTCAAAAATATCTGAATGCCATGGTTCAACATATACAGCAAAAGAACCTTTTCTTTT 508175 Query 48356 ATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAAT 48415 || |||||||||| |||||| || |||| ||| ||||||||||||| ||||| | Sbjct 508174 TCCTCCACCTTGATCTACATATCTTGCTGTATCATTAAAAACTCTTAACATCGGGACTAA 508115 Query 48416 ACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAAT 48475 |||||||||||||||||| ||||| || ||| |||||| |||| | Sbjct 508114 ACCATTTGATATACCATTAGTTCCTCTGATGTAAGAATTTTGAGCTCTAATATCTTGTAC 508055 Query 48476 TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATA 48535 | | ||||||||| ||||| ||||| || | ||||| | || | || ||| | Sbjct 508054 AGCCACACCTATACCTCCTGCTGTTTTACTAATCAATGCACATTGCTTTAATGTTTCAAA 507995 Query 48536 AATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATG 48595 || |||||||| |||| | |||| ||||| ||| || ||||||||| || Sbjct 507994 TATACCTTCTATTGAATCAGATTTCATTGATAATAAAAAGCATGAAGACATTTGGGGTCT 507935 Query 48596 ACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAA 48655 ||||| |||||||||||||| |||| |||||| |||| |||| | ||| | || Sbjct 507934 TGGTGTTCCCGAATTAAATAATGTAGGAGTAGCATGAGTAAAATATTTTTGTGACATTAA 507875 Query 48656 TTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCAT 48715 | ||| ||||| | | | || | ||| | |||||| ||||||||||| | ||| Sbjct 507874 ATGATAAGTTTCTAAAGCCTTTTCAAGATCATCTATATGTATTCCTATAGATACTCTCAT 507815 Query 48716 TAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTC 48775 ||| | || ||||| | ||||| |||||| ||||| || || | || || |||| Sbjct 507814 TAATAAATGCTGAGGACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTTTC 507755 Query 48776 CAATGTTTTAAAACCAAAATA 48796 ||||||||||| |||||||| Sbjct 507754 TAATGTTTTAAATCCAAAATA 507734 >seq10 Length=1634725 Score = 333 bits (368), Expect = 3e-86 Identities = 619/893 (69%), Gaps = 23/893 (3%) Strand=Plus/Minus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||||||||| || |||||||| |||||||||||||| |||||||| | ||| ||||| | Sbjct 1455781 TTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTAA 1455722 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAA---TTCTAA 18785 ||||| || ||||||||||||| || | | ||| | | ||||| |||||| Sbjct 1455721 GTCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACCTAAACATTCTAA 1455662 Query 18786 TAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTAT 18845 || | | ||| || ||||||| ||| ||| ||| | |||||||||| || Sbjct 1455661 TAATCG---ATCAGCAACAAATTCAATGTATTGAGACATAAGTCTTGAATTCATTCCAAT 1455605 Query 18846 TAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATAT 18905 ||| | | ||||| | || || |||| | ||||| | ||||| ||| | Sbjct 1455604 TAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAAC 1455545 Query 18906 AATAGATACAACTCTATCTTCATTAGGAGGGTATAG---AAGATGTTTAAACATCAAACA 18962 ||| | ||| ||||| | | | ||| || | | | || || ||||| Sbjct 1455544 TATATTTTGAACAACCTCTTC--TGGTAATTTATTTTCCAACAAGCTATAA-ATTAAACA 1455488 Query 18963 TGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACC 19022 |||||| |||| ||| || |||||||| |||||||||||| |||||||||||| Sbjct 1455487 ATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACC 1455428 Query 19023 AGGCATCAGTCCTCtttttttt--AACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080 | | | | | | || ||||| ||||| ||||| | | ||| |||| ||| ||| Sbjct 1455427 ATGTA--ATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAAT 1455370 Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA 19140 || ||||| || |||| ||| || | |||||| || || || || | || || Sbjct 1455369 ATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAG-AGT-TCGT-ATCATTT 1455313 Query 19141 ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTA 19200 |||||||| |||||| || || ||||||| ||| || | || |||| || | Sbjct 1455312 ATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGA 1455253 Query 19201 AATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATT 19260 |||| || | | ||| | ||| ||| ||| ||| || |||||||| || || Sbjct 1455252 AATAAATTTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTATAGGTT 1455193 Query 19261 TCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATC 19320 || || || |||||||| | ||| || ||||| | ||||| | | ||||| |||| Sbjct 1455192 TCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATT 1455133 Query 19321 TGTACTTCACTACAAAATCTTTCGACC-AAATTTTCATTAACTATTCCATCACTAGCTGC 19379 |||||||| || ||||| || | | | |||||||| |||||||||||||||||||| Sbjct 1455132 TGTACTTCTCTTAAAAAT-TTACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGC 1455074 Query 19380 AAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAA-T 19438 ||||||||||| |||||||| |||||||||||||||| | ||||| | ||| || | Sbjct 1455073 AAAAAATGCTAGCACATGTTTTATAAAATGTTTTTCATTTACATTTAATTT-TTCAAAGT 1455015 Query 19439 CATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTT 19498 | || | ||| | |||||||||| ||||||| | |||||||| || ||||| ||||||| Sbjct 1455014 CTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTT 1454955 Query 19499 TATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTT 19551 |||| | ||||||| ||| |||| |||||| || ||||||| || Sbjct 1454954 TATAAAAATTCCATACTTCAGGATACATAATAGGATGTAATGTAAATCTACTT 1454902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108525971960