Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq10 289 3e-73 >seq10 Length=1634725 Score = 289 bits (320), Expect = 3e-73 Identities = 569/833 (68%), Gaps = 19/833 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 |||||| || ||||||||| ||| |||||| |||| || |||||||| ||||||| Sbjct 1455793 CATAACACCTGATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTG 1455734 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATA---TAGTACTACA 36988 || ||||| ||||| || ||||||||| || || | | | | | || Sbjct 1455733 TAAAGATATTAAGTCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTGGAGCAACC 1455674 Query 36989 TGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATA 37048 | | |||| | | || | ||| ||||||||||| ||||||| | |||| ||| | Sbjct 1455673 TAAACATTC--TAATAATCG-ATCAGCAACAAATTCAATGTATTGAGACATAAGTCTTGA 1455617 Query 37049 GTTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTAC 37108 || || ||||||| | || | | || || |||| | |||||| | || Sbjct 1455616 ATTCATTCCAATTAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAAC 1455557 Query 37109 AGCATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAA 37168 || |||||||||||||| || ||| ||||| | | || || || | || | Sbjct 1455556 TGCTTCTTTAACTATATTTTGAACAACCTCTTCTGGTAATTTATTTTCCAACAAGCTATA 1455497 Query 37169 CAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAA 37228 | |||||| |||||| ||||| |||||||||||||| |||||||||||| ||| Sbjct 1455496 AATTAAACAATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAA 1455437 Query 37229 GGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGA 37288 ||||| || | | | | | |||||||| |||||||||||| |||| |||| Sbjct 1455436 TGTTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACT 1455377 Query 37289 AAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATA 37348 ||| || || ||||| || |||| ||||||| | | | | |||| | | Sbjct 1455376 AAATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAG---AGTTCGT 1455320 Query 37349 ATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAAT 37408 |||| |||||||| || ||| ||| || ||| | | || ||||||| Sbjct 1455319 ATCATTTATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAAT 1455260 Query 37409 TGCTTTTAAGAGAAAGtttttttCT-TCACT-ATCTGTTATATAAGTATCAATTAGTAAA 37466 || | || | || || | ||| | || ||| | |||||| ||||||||| |||| Sbjct 1455259 AGCATGAAATA--AATTTAATCTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAA 1455202 Query 37467 CTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCT 37526 ||||| |||||||||| |||||||||| |||||| |||||| ||||||| | ||| Sbjct 1455201 CTATAGGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCT 1455142 Query 37527 TCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCA 37586 ||| || ||| || || | ||||| | ||||||| ||||| ||||| |||||| Sbjct 1455141 TCAATTATTTGTACTTCTCTTAAAAATTTACTAGCTAAATTTTCTAATACTATTCCATCA 1455082 Query 37587 CTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCAT---CATTTGATAAT 37643 ||||||||||| || || || |||| ||||||||||||| |||||| |||| |||| Sbjct 1455081 CTAGCTGCAAAAAATGCTAGCACATGTTTTATAAAATGTTTTTCATTTACATT---TAAT 1455025 Query 37644 TTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 |||| | || || | ||| |||||||||| | ||| ||| | |||||||| Sbjct 1455024 TTTTCAAAGTCTTTCAAATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAA 1454972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592316511245560