Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq6 93.3 3e-14 >seq6 Length=916956 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||||||||| ||||| |||||||| ||| | | || || || || || |||||||| Sbjct 466383 TCTTTTTGAATGTTGTAGTCAGATAGTGTTCTACCATCTTCTAATTGTTTTCCGGCAAAA 466324 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || | || |||||||| | |||| || || || || ||| || ||| ||| Sbjct 466323 ATTAATCTTTGTTGATCAGGAGGAATACCTTCTTTATCTTGAATTTTAGCTTTAACATTT 466264 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || | ||| || || | || || ||||| || || ||||||||||| Sbjct 466263 TCAATGGTATCAGATGGCTCAACATCAAGAGTGATTGTTTTCCCGGTTAAAGTTTTTACG 466204 Query 48756 AAAATCTGCAT 48766 ||||||||||| Sbjct 466203 AAAATCTGCAT 466193 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||||||||| |||||||||||||| ||| | || || || || || || || || Sbjct 466155 TCTTTTTGAATGTTGTAATCAGATAGTGTTCTTCCATCCTCTAATTGTTTTCCAGCGAAA 466096 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || | || |||||||| | |||| || || || || ||| || ||| ||| Sbjct 466095 ATTAATCTTTGTTGATCAGGTGGAATACCTTCTTTATCTTGAATTTTAGCTTTAACATTT 466036 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || || | || || || | ||||| ||||| || || ||||||||||| Sbjct 466035 TCAATAGTATCAGATGGTTCAACATCAAGAGTAATTGTTTTCCCGGTTAAAGTTTTTACG 465976 Query 48756 AAAATCTGCAT 48766 ||||||||||| Sbjct 465975 AAAATCTGCAT 465965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937418935597