Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq6 342 3e-89 >seq6 Length=916956 Score = 342 bits (378), Expect = 3e-89 Identities = 461/630 (73%), Gaps = 13/630 (2%) Strand=Plus/Minus Query 25915 ATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCT 25974 ||||| || ||| | | |||||||||||| || | ||| || |||||||||||||| | Sbjct 508336 ATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAATAAATCACG 508277 Query 25975 CGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGA 26034 ||||||| ||||||||| || ||||| ||| ||| |||||| || |||||||||||||| Sbjct 508276 AGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATATCTGA 508217 Query 26035 GTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTAC 26094 ||||||||||| | ||| | ||||||| |||||||||||||||||||||||||||||| Sbjct 508216 ATGCCATGGTTCAACATATACAGCAAAAGAACCTTTTCTTTTTCCTCCACCTTGATCTAC 508157 Query 26095 GTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTT 26154 |||||||| || ||||| |||||| | ||||| || ||||| ||| |||| | || || Sbjct 508156 ATATCTTGCTGTATCATTAAAAACTCTTAACATCGGGACTAAACCATTTGATATACCATT 508097 Query 26155 TG-TGCTATGAATCTTGGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCAC 26213 | | || || || | || | | ||||||||| || || | ||| || || | Sbjct 508096 AGTTCCTCTG-ATGTAAGAATTTTGAGCTCTAATATCTTGTACAGCCACACCTATACCTC 508038 Query 26214 CAGCCCATTTTGAAATAGCTGCACAAT-CTGAAACTGTATCGAAAATTCCTTTTATGCTA 26272 | || ||| ||| |||||| | || || ||| || || || |||| ||| | Sbjct 508037 CTGCTGTTTTACTAATCAATGCACATTGCTTTAA-TGTTTCAAATATACCTTCTATTGAA 507979 Query 26273 TCACCTTTCATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTA 26332 ||| ||||||| ||||||||| || ||||| | ||| | | |||||| |||||| Sbjct 507978 TCAGATTTCATTGATAATAAAAAGCATGAAGACATTTGGGGTCTTGGTGTTCCCGAATTA 507919 Query 26333 AATAATGTCGGTGTAGCATGAGTATAATATCCT--TCAC-TCAAAGCTGTATAAGTTTCA 26389 |||||||| || |||||||||||| ||||| | | || | ||| || ||||||||| Sbjct 507918 AATAATGTAGGAGTAGCATGAGTAAAATATTTTTGTGACATTAAA--TG-ATAAGTTTCT 507862 Query 26390 AGAACTTCATCGATATTGTAATTACTAACTTCAATAGCTGTTCTTAACCACATATATTGA 26449 | | | | || | || | || | | | |||| | ||| | | | || ||| Sbjct 507861 AAAGCCTTTTCAAGATCATCTATATGTATTCCTATAGATACTCTCATTAATAAATGCTGA 507802 Query 26450 GGTCGTTCAATTACATTATTTTCCGCATCTCTAATCAAATAAGATTTTTCTAAAGTTTTC 26509 || |||||||| | ||||| | || |||| || ||||| ||||||| ||||| Sbjct 507801 GGACGTTCAATAATTTTATTAT--TAATACGTAAT-AAGTAAGACCTTTCTAATGTTTTA 507745 Query 26510 AATCCAAAATAATCATGATTGAAATCTCTT 26539 |||||||||||||||| ||||||||||||| Sbjct 507744 AATCCAAAATAATCATAATTGAAATCTCTT 507715 Score = 163 bits (180), Expect = 1e-35 Identities = 466/700 (67%), Gaps = 36/700 (5%) Strand=Plus/Minus Query 25059 ATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATG 25118 |||||||||| |||||||||||||||| ||||| || || || ||||||||||| || Sbjct 509165 ATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGACGTTGAAGCTGTTGGCATAGGTG 509106 Query 25119 CTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCAAT 25178 ||| | || |||||||| || || | |||| || | || ||||||| |||||||| Sbjct 509105 CTAAAAGAAGAGAATTTCTTAATCCGTGTTTACTTATTTTTTTTTTTAATAAATCCCAAT 509046 Query 25179 CTAAA---TTATTATCTAACTCGATATCGTTATCATATAAATCAAATTGTAACAATCC-- 25233 | || ||||||||| ||| | | | || || |||||||||||| | ||| Sbjct 509045 CCCAATATTTATTATCT-ACT---TTTGCATTCCACAT--ATCAAATTGTAATATTCCTT 508992 Query 25234 -ACTTGCTGCAGGCGATTGATCAAAAGTTGAATATTTACCTTTTGTTATTGCCATATCTT 25292 ||||||| | ||||| | | | |||| || || | ||||| || Sbjct 508991 GGCTTGCTGGACTACCTTGAT---ATGATTCATATGGTCCACTTACTTGTGCCAATTCAA 508935 Query 25293 TTGATTGCTCTAACGCAGCATAATACATATTTTCAAAAATCGCTTTGTTTAAAAACTTAG 25352 || ||||| ||||||||||||||| ||||||| || | | ||||| |||| Sbjct 508934 CAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCTATTTAATTCTTTAG 508875 Query 25353 CTTTTTCTCCATCGAAAGCAATTTCCATTAAGGC--GAACGTATCTGCTAATCCCTGAAC 25410 ||| ||| || | | | | | | || || || |||||||||||||| || || Sbjct 508874 CTTCTTCAGATTCATATGGA--TATCTTAAAAGCATAAATGTATCTGCTAATCCTTGTAC 508817 Query 25411 TCCTAATCCAACTGGACGATGTTTATTATTACTTATCTCAGTTTCTGATGTTGGATAGAA 25470 ||||| ||||| || | |||| | ||||| | | || | |||| |||||| | Sbjct 508816 TCCTATTCCAATAGGTCTATGTCTTTTATTTGATCTTTCCGCTTCTTTAACTGGATAATA 508757 Query 25471 ATTTGTATCGATCACATTATCTAGATTCTTTATGGCAAGCTTTGTGTATTTTCTCAACTC 25530 |||| | || || | ||||||| ||| | || | | ||| ||| | || | Sbjct 508756 ATTTCTTTCAATAATTTTATCTAAATT-TCTA-GTAATAATTTTAGTAATATC---ATAT 508702 Query 25531 AATAAAGTCAAAATAAGGCTTATCGTTTATATCTCTTTTTACAAATTTAGATAAAGCGAT 25590 ||| | ||| ||| || ||| | ||||| | |||||||| |||| || || Sbjct 508701 AATTTTTTAAAATTAA----ATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAAT 508646 Query 25591 TGATGCTAAATTACAAACAGCTTGTTCTTTCCCGTCA-GAATATTCATTGATCTCGATAC 25649 || |||||||||||||||||| ||| || || | | ||||||| | || || || Sbjct 508645 GGAAGCTAAATTACAAACAGCTACTTC-ATCAGGTGATGTATATTCAATAATTTCACAAC 508587 Query 25650 ATAAGTTGCTAGATTTGATTACTCCATAATTCTTTTGATT--ATTGCATGTATTGACA-A 25706 |||| || || |||| ||| ||| |||| |||||||| ||| | | | ||| Sbjct 508586 ATAAATTACTGCATTTAATTGTTCCTAAATTTTTTTGATTCGATT---TAGAATTACATG 508530 Query 25707 TATCTTTATATCCTAAATATGGCGTTCCTGTTTCAATTTG 25746 |||||||||| | |||||| || ||||| ||||| Sbjct 508529 CATCTTTATATAACATATATGGTACACCAGTTTCTATTTG 508490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039879726925