Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq14 161 1e-34 >seq14 Length=2514833 Score = 161 bits (178), Expect = 1e-34 Identities = 485/735 (66%), Gaps = 24/735 (3%) Strand=Plus/Plus Query 47797 ATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATCT 47856 ||||||||||||| ||| | |||||| | |||||| | || || | ||||||||| Sbjct 923436 ATAACAAAATCATTAGGAGTTGTTTGTTGTAACATTAAATATATTGCATATACATAATCT 923495 Query 47857 CTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATA--AACAGTCTTGCT 47914 | ||||| ||||| || | || || ||| | |||||||| ||||| |||||| || Sbjct 923496 TTTGCATGACCCCAATCTCTAAATGTATCGATATTTCCTA-ATATAATAACAGT-GTGAA 923553 Query 47915 TACCTTCAGAGATTGCTTTTAATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCAC 47974 | || | | ||| | || | ||||||| || || ||||| |||||||||| Sbjct 923554 TTTTTTTAAATATTTTTGCTATACCCTTTGTAATTTTTTTTGTAACAAATGTTTCACCAC 923613 Query 47975 GTCTTGGAGATTCATGATTAAAAAGAATACCA-CTACAGGCATACATTCCGTATGATTCA 48033 |||||||| |||||||||||| | |||||| |||| | |||| |||| ||| Sbjct 923614 GTCTTGGACTTTCATGATTAAATAATATACCATTTACA-CAAAACATATTATATGCTTCT 923672 Query 48034 CGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGA 48093 | ||| || ||| ||| ||| | ||| | |||||| | |||||||| || |||| Sbjct 923673 CTATAATTTTTTGTTATATAGTGACTATATAATTTTGCTATCCCATAAGGTGAGACTGGA 923732 Query 48094 TAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCA----CCTTACCATAAAGTTCACT 48149 | || ||||| | || | || | || || | |||||||| | |||| Sbjct 923733 TTAAACGGTGTATTTTCATTTTG-ACATTCGGTTTGAATAGTATTACCATATAATTCAGA 923791 Query 48150 GGTGGATGCTTGAT-AGATACGAACCCTATCTTCCATCTCAAGCAAACGGACTGCCTCAA 48208 || || || | || | || || ||| || |||| || | ||| || | Sbjct 923792 TGTTGAAGCATTATAAAATTTGA----TATTATCAATCTTTGATAATTTAATTGCTTCTA 923847 Query 48209 GCACTCTCAGGGTGCCTATGGCATCTGT---CTGACCAGTATACTCGGGCATCTCAAACG 48265 | ||||| || || || | |||| || | ||||| || || | ||||| Sbjct 923848 ATATTCTCAACGTACCAAT---AGCTGTACATTGTGCTGTATATTCAGGTAATTCAAAGC 923904 Query 48266 AAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTCATCTGGTTGAACCTGCTGAA 48325 || ||||||||||| ||||| | | |||||| || |||| ||||| | | | Sbjct 923905 TTACTTTTACATGACTTTGTGCAGCTAAATTATATATTTCATTTGGTTTTATTTTAGATA 923964 Query 48326 TAACCCTCACTAAATTTGTAGAGTCTGTTAAGTCTCCATAATGCAATTTTAATTGATCAT 48385 | | | || ||| || || ||| || |||||||| || ||||||| ||| Sbjct 923965 TTAAAGAAAATATATTACTATTATCAAGTAAATCACCATAATGTAAATTTAATTTTTCAA 924024 Query 48386 AAATGTGATCAATTCTATGTGTATTAATTAAAGAAGCCCGACGGACAATACCATGAACCT 48445 | || ||||| ||||| | |||||||| | | | || | | | |||||||| | Sbjct 924025 ATATATGATCTATTCTTTTTGTATTAAATGTACTACACCTCCTAATCACCCCATGAACTT 924084 Query 48446 CATACCCCTTTTCAAGAAGAAGTTCTGCT-AAGTATGAACCATCTTGTCCTGTAATACCA 48504 |||| || ||||| | ||| ||||| ||| || ||||| ||||| |||||||| |||||| Sbjct 924085 CATATCCTTTTTCTAAAAGTAGTTC-GCTCAAATATGACCCATCCTGTCCTGTGATACCA 924143 Query 48505 GTGATTAAAGCAACT 48519 |||| |||||| Sbjct 924144 AATATTAGTGCAACT 924158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665494075571480