Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq6 141 1e-28 >seq6 Length=916956 Score = 141 bits (156), Expect = 1e-28 Identities = 452/690 (66%), Gaps = 11/690 (2%) Strand=Plus/Plus Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 || ||||| |||||||||| | || || ||||| ||||| || || ||||| Sbjct 508496 GAAACTGGTGTACCATATATGTTATATAAAGATGCATGTAATTCTAAATCGAATCAAAAA 508555 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 ||||| |||||||| || || ||| | || |||||| | || || ||| Sbjct 508556 AATTTAGGAACAATTAAATGCAGTAATTTATGTTGTGAAATTATTGAATATACATCACCT 508615 Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCT-TCCAAAGTATGTCAATGAAGA 76083 ||||| |||||||| ||||| || || || || | | |||| | ||| || ||| Sbjct 508616 GATGAAGTAGCTGTTTGTAATTTAGCTTCCATTGCATTATGCAAATT-TGTTGATAGAGA 508674 Query 76084 GACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCT 76143 | ||| ||| | ||||| | |||| || || || ||| |||| | |||| | Sbjct 508675 AAAAAAAGAATTTAATTTTAAAAAATTATATGATATTACTAAAATTATTACTAGAAATTT 508734 Query 76144 AAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAG-TCTAATATGC 76202 | | | | ||||| ||||||| |||||| ||| | ||| ||||| || |||| Sbjct 508735 AGATAAAATTATTGAAAGAAATTATTATCCAGTTAAAGAAGCG-GAAAGATCAAATAAAA 508793 Query 76203 GACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCT 76262 |||| ||||||||||| | || || ||||| | || ||| |||||| | | | | Sbjct 508794 GACATAGACCTATTGGAATAGGAGTACAAGGATTAGCAGATACATTTATGCTTTTAAGAT 508853 Query 76263 ACGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATC 76322 | ||| ||| || || ||||| || || | ||| | || |||||||| |||||| Sbjct 508854 ATCCATATGAATCTGAAGAAGCTAAAGAATTAAATAGAAGAATATTTGAAACTATGTATT 508913 Query 76323 ACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTG 76382 | || | | || | | ||||||||| ||| || | ||||| ||| | Sbjct 508914 ATGCTGCTTTAGAAATGTCTGTTGAATTGGCACAAGTAAGTGGACCATATGAATCATATC 508973 Query 76383 AGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCA-AG 76441 | ||| ||| || |||||| | | || |||||||||| |||| | ||| | | Sbjct 508974 AAGGTAGTCCAGCAAGCCAAGGAATATTACAATTTGATATGT-GGAATGCAAAAGTAGAT 509032 Query 76442 CTCAACTA---CGACTGGGATGTTCTCAAGGAACGCATCAAGGAGA-AGGGTCTTCGTAA 76497 || || || |||||| || | || || | ||| | | | || | | || Sbjct 509033 AATAAATATTGGGATTGGGAT-TTATTAAAAAAAAAAATAAGTAAACACGGATTAAGAAA 509091 Query 76498 CAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGA 76557 |||| | | ||||| ||||||||||| || || ||||||| || || |||||||| Sbjct 509092 TTCTCTTCTTTTAGCACCTATGCCAACAGCTTCAACGTCACAAATTTTAGGAAATAATGA 509151 Query 76558 ATGCTTTGAACCATACACAACAAACATCTA 76587 || |||||||||||| |||| ||||| || Sbjct 509152 ATCCTTTGAACCATATACAAGTAACATTTA 509181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569309172320