Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq10 282 8e-71 seq6 190 4e-43 seq11 183 6e-41 seq13 86.0 1e-11 >seq10 Length=1634725 Score = 282 bits (312), Expect = 8e-71 Identities = 548/801 (68%), Gaps = 22/801 (3%) Strand=Plus/Minus Query 49573 CTTCTAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTC 49632 ||| ||| |||||||| | ||| || |||||||||||| | || || | ||| Sbjct 1455737 CTTGTAAAGATATTAAGTCCATCCAACTAAATGGATTTTTTGAATGGAAA-ACTTTGGAG 1455679 Query 49633 CTATCAATACATA-TAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCA 49691 | | | | |||| |||||||| ||| || |||||||||| ||||| ||||| | | Sbjct 1455678 CAACCTAAACATTCTAATAATCGATCAGCAACAAATTCAATGTATTGAGACATAAGTCTT 1455619 Query 49692 CAATTCATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttct 49751 ||||||| || | ||| | | | ||||| | ||| ||||||| | |||||| ||| Sbjct 1455618 GAATTCATTCCAATTAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCA 1455559 Query 49752 acagcttgtttaattatcataattatattattttttgataatttatattt-aatatgatt 49810 || |||| ||||| ||| | | | | || || |||||||| || || | | | Sbjct 1455558 ACTGCTTCTTTAACTATATTTTGAACAACCTCTTCTGGTAATTTATTTTCCAACAAGCT- 1455500 Query 49811 cgcatatattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATT 49870 ||| |||||||| |||||| || ||||| || || || ||| || |||||||| Sbjct 1455499 ---ATAAATTAAACAATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATT 1455443 Query 49871 ACTAAAAGTTAATCC-TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAAC 49929 |||||| ||||| || || ||| || | | ||||||| ||||||||||| ||||| Sbjct 1455442 ACTAAATGTTAAACCATGTAATTTATTTTGT-TTTTTAAACCAAAATATTGCACAAAAAC 1455384 Query 49930 TACTAGAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTA 49989 | | | ||| ||||| || |||||||| ||| |||| |||||| | ||| | | Sbjct 1455383 TTCCACTAAATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAA--AAGA 1455326 Query 49990 ATT--TATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTAT 50047 || |||||| |||||| || ||||| |||||| ||||| || | ||||| Sbjct 1455325 GTTCGTATCAT---TTATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTAT 1455269 Query 50048 ATTTTCTATAGCTTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNAT 50107 |||||| ||||| | |||||| | | | || | || Sbjct 1455268 ATTTTCAATAGCATGAAATAAATTTAATCTCTCTTTCTCATCCCTAATATAATTATCAAT 1455209 Query 50108 TAATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTG 50167 ||||||| ||| ||||||| |||| | ||| | |||||||||||| | |||||| | Sbjct 1455208 TAATAAACTATAGGTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTT 1455149 Query 50168 TCTTGCTTCTGAATA-CTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAA 50226 | | ||||| | || || ||||| || ||| | ||||||| || |||| | Sbjct 1455148 TTTGGCTTC-AATTATTTGTACTTCTCTTAAAAATTTACTAGCTAAATTTTCTAATACTA 1455090 Query 50227 TACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTT 50286 | |||||| ||||| || ||||||| || | ||| ||||||||||||||||| | | Sbjct 1455089 TTCCATCACTAGCTGCAAAAAATGCTAGCACATGTTTTATAAAATGTTTTTCATTTACAT 1455030 Query 50287 TTAAATTTTCCCAAG--ATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAA 50344 || |||||| | ||| ||||| ||| |||||||||||| |||||| |||||||| Sbjct 1455029 TT-AATTTTTCAAAGTCTTTCAA-ATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAA 1454972 Query 50345 TGATGCTACGGATTTTTTATA 50365 ||| || | | ||||||||| Sbjct 1454971 TGAGGCCTCAGCTTTTTTATA 1454951 >seq6 Length=916956 Score = 190 bits (210), Expect = 4e-43 Identities = 180/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| | | ||| ||||| ||||| |||| ||||| || || |||||| Sbjct 466194 ATACCTCCTCTTAATCTTAAAACTAAGTGTAAGGTAGATTCTTTTTGAATGTTGTAATCA 466135 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| ||||| | |||| || |||||||| ||||| || |||||||| |||||||||||| Sbjct 466134 GATAGTGTTCTTCCATCCTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGT 466075 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| |||||| ||| ||||| |||| ||| || | ||| Sbjct 466074 GGAATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGATGGTTCA 466015 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || |||||||| ||||| || ||||| ||||| | || |||||||| Sbjct 466014 ACATCAAGAGTAATTGTTTTCCCGGTTAAAGTTTTTACGAAAATCTGCAT 465965 Score = 181 bits (200), Expect = 2e-40 Identities = 177/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| ||||| | | ||| ||||||||||| |||| ||||| || ||||| ||||| Sbjct 466648 ACCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATGTTATAGTCAGA 466589 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 |||||||| | || || |||||||| ||||| || |||||||| |||||||||||||| Sbjct 466588 TAATGTTCTACCGTCTTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGG 466529 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || |||||||||||||| ||||| ||| || || |||| |||||| | ||| || Sbjct 466528 GATACCTTCTTTATCTTGAATTTTGGCTTTAACGTTTTCAATAGTATCTGATGGTTCAAC 466469 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||||||| ||||| || ||||||||||| | || || ||||| Sbjct 466468 ATCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 466421 Score = 163 bits (180), Expect = 6e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| | | ||| ||||| |||||||| | ||||| || || || ||| Sbjct 466422 ATACCTCCTCTTAATCTTAAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCA 466363 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||| ||||| |||| || |||||||| || ||||| |||||||| ||||||||||| Sbjct 466362 GATAGTGTTCTACCATCTTCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGA 466303 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| |||||| ||| ||||| || | ||| || | || Sbjct 466302 GGAATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATGGTATCAGATGGCTCA 466243 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| || ||||| || ||||| ||||| | || |||||||| Sbjct 466242 ACATCAAGAGTGATTGTTTTCCCGGTTAAAGTTTTTACGAAAATCTGCAT 466193 Score = 154 bits (170), Expect = 3e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| ||||| | | ||| ||||| ||||| |||| ||||| || ||||| ||| Sbjct 465966 ATACCTCCTCTTAATCTTAAAACTAAGTGTAAGGTAGATTCTTTTTGAATGTTATAGTCA 465907 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 |||||||||| | |||| || ||||| || |||||||| |||||||| |||||||||||| Sbjct 465906 GATAATGTTCTTCCATCTTCTAATTGCTTTCCAGCAAAAATTAATCTTTGTTGATCAGGT 465847 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||||||||| |||||| ||| ||||| || | ||| || | || Sbjct 465846 GGGATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATGGTATCGGATGGCTCA 465787 Query 192487 ACTTCTAGAGTAATGGTTTTACC 192509 || || || || || ||||| || Sbjct 465786 ACATCAAGGGTTATAGTTTTTCC 465764 >seq11 Length=1720574 Score = 183 bits (202), Expect = 6e-41 Identities = 170/216 (79%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 192324 TAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATC 192383 || ||| |||||||| || | |||||| || ||||| ||||||||||||| | |||| Sbjct 1496419 TATTACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATC 1496478 Query 192384 ATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATC 192443 || |||||||| ||||| || |||||||| ||||||||||| || |||||||||||||| Sbjct 1496479 TTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATC 1496538 Query 192444 TTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGT 192503 ||| ||||| ||| ||||| || | ||| || | ||| || || ||||| || || Sbjct 1496539 TTGGATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGT 1496598 Query 192504 TTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||| || ||||||||||| | ||| || |||||||| Sbjct 1496599 TTTTCCGGTTAATGTTTTTACAAAGATTTGCATTTT 1496634 >seq13 Length=2616835 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 129708 TAAAATATTTACATAAAATAAAAATAGTACATTGTGATTTAAAACCAGAGAATATATTAT 129767 || ||||||||||||||||||| ||||||||| | |||||||||||||| |||||||||| Sbjct 847789 TAGAATATTTACATAAAATAAATATAGTACATAGAGATTTAAAACCAGAAAATATATTAT 847848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984479508067650