Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq10 266 6e-66 seq6 190 4e-43 seq11 168 1e-36 seq13 86.0 1e-11 >seq10 Length=1634725 Score = 266 bits (294), Expect = 6e-66 Identities = 571/848 (67%), Gaps = 26/848 (3%) Strand=Plus/Minus Query 38830 ATTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTA 38889 ||||||| || || | |||| | ||||| || || ||||||||||||| ||| ||||||| Sbjct 1455782 ATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAAGATATTA 1455723 Query 38890 AATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACA-TAT 38948 | | ||| || |||||||||||| | | | || | ||| | | | | ||| | | Sbjct 1455722 AGTCCATCCAACTAAATGGATTTTTTG-AATGGAAAACTTTGGAGCAACCTAAACATTCT 1455664 Query 38949 AATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAAT 39008 ||||||| ||| || |||||||||| ||||| |||| | | ||||||| || | | Sbjct 1455663 AATAATCGATCAGCAACAAATTCAATGTATTGAGACATAAGTCTTGAATTCATTCCAATT 1455604 Query 39009 AATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatt 39068 || | | | ||||| | ||| ||||||| | |||||| ||| || |||| ||||| | Sbjct 1455603 AAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACT 1455544 Query 39069 atcataattatattattttttgataatttatatt-taatatgattcgcatataGTAAACA 39127 || | | | | || || |||||||| || || | | | ||| | |||||| Sbjct 1455543 ATATTTTGAACAACCTCTTCTGGTAATTTATTTTCCAACAAGCT----ATAAATTAAACA 1455488 Query 39128 TGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCC 39187 |||||| || ||||| ||||| || ||| || |||||||||||||| ||||| || Sbjct 1455487 ATTAAAATCTGTGTGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACC 1455428 Query 39188 -TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATA 39246 || ||| || | | ||||||| ||||||||||| |||||| | | ||| |||| Sbjct 1455427 ATGTAATTTATTTTGT-TTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATA 1455369 Query 39247 TACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATT--TATCATCTAA 39304 | || || ||||| ||| |||| |||||| | ||| | | || |||||| | Sbjct 1455368 TTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAA--AAGAGTTCGTATCATTT-- 1455313 Query 39305 AATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTT 39364 ||||| || ||||| |||||| ||||| || | ||||||||||| ||||| | Sbjct 1455312 -ATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATG 1455254 Query 39365 AAATAA--TTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATAC 39422 |||||| || || | ||| Sbjct 1455253 AAATAAATTTAAT--CTCTCTTTCTCATCCCTAATATAATTATCAATTAATAAACTATAG 1455196 Query 39423 ATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAA 39482 ||||||| |||| | ||| | |||||||||||| | |||||| | | ||||| | Sbjct 1455195 GTTTCAGAGTGTATATTTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTC-AAT 1455137 Query 39483 TA-CTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGC 39541 || || ||||| || ||| | ||||||| || |||| || |||||| || Sbjct 1455136 TATTTGTACTTCTCTTAAAAATTTACTAGCTAAATTTTCTAATACTATTCCATCACTAGC 1455077 Query 39542 TGCGAAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCA 39601 ||| || ||||||| |||| ||| ||||||||||||||||| | ||| |||||| | | Sbjct 1455076 TGCAAAAAATGCTAGCACATGTTTTATAAAATGTTTTTCATTTACATTT-AATTTTTCAA 1455018 Query 39602 AG--ATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGAT 39659 || ||||| ||| |||||||||||| |||||| |||||||| || || | | | Sbjct 1455017 AGTCTTTCAA-ATCACTTGATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCT 1454959 Query 39660 TTTTTATA 39667 |||||||| Sbjct 1454958 TTTTTATA 1454951 >seq6 Length=916956 Score = 190 bits (210), Expect = 4e-43 Identities = 180/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| | || ||| ||||| ||||| |||| ||||| ||| || ||||| Sbjct 466194 ATACCTCCTCTTAATCTTAAAACTAAGTGTAAGGTAGATTCTTTTTGAATGTTGTAATCA 466135 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| | || | | || || |||||||| ||||| ||||||||||| ||||| |||||| Sbjct 466134 GATAGTGTTCTTCCATCCTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGT 466075 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| |||||| ||| ||||| |||||||| || | ||| Sbjct 466074 GGAATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGATGGTTCA 466015 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || |||||||| ||||| || ||||| ||||| | ||| |||||||| Sbjct 466014 ACATCAAGAGTAATTGTTTTCCCGGTTAAAGTTTTTACGAAAATCTGCAT 465965 Score = 190 bits (210), Expect = 4e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| ||||| | || ||| ||||||||||| |||| ||||| ||| ||||| || || Sbjct 466648 ACCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATGTTATAGTCAGA 466589 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 ||| | || |||| || |||||||| ||||| ||||||||||| ||||| |||||||| Sbjct 466588 TAATGTTCTACCGTCTTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGG 466529 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || |||||||||||||| ||||| ||| || || ||||||||||| | ||| || Sbjct 466528 GATACCTTCTTTATCTTGAATTTTGGCTTTAACGTTTTCAATAGTATCTGATGGTTCAAC 466469 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || |||||||| ||||| || ||||||||||| | ||| || ||||| Sbjct 466468 ATCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 466421 Score = 163 bits (180), Expect = 5e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| | || ||| ||||| |||||||| | ||||| ||| || || || Sbjct 466422 ATACCTCCTCTTAATCTTAAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCA 466363 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 |||| | || | || || |||||||| || |||||||||||||| ||||| ||||| Sbjct 466362 GATAGTGTTCTACCATCTTCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGA 466303 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| |||||| ||| ||||| || ||||| || | || Sbjct 466302 GGAATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATGGTATCAGATGGCTCA 466243 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || ||||| || ||||| || ||||| ||||| | ||| |||||||| Sbjct 466242 ACATCAAGAGTGATTGTTTTCCCGGTTAAAGTTTTTACGAAAATCTGCAT 466193 Score = 150 bits (166), Expect = 3e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||| ||||| | || ||| ||||| ||||| |||| ||||| ||| ||||| || Sbjct 465966 ATACCTCCTCTTAATCTTAAAACTAAGTGTAAGGTAGATTCTTTTTGAATGTTATAGTCA 465907 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 ||||| | || | | || || ||||| || ||||||||||||||||| ||||| |||||| Sbjct 465906 GATAATGTTCTTCCATCTTCTAATTGCTTTCCAGCAAAAATTAATCTTTGTTGATCAGGT 465847 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || |||||||||||||| |||||| ||| ||||| || ||||| || | || Sbjct 465846 GGGATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATGGTATCGGATGGCTCA 465787 Query 172020 ACTTCTAGAGTAATGGTTTTACC 172042 || || || || || ||||| || Sbjct 465786 ACATCAAGGGTTATAGTTTTTCC 465764 >seq11 Length=1720574 Score = 168 bits (186), Expect = 1e-36 Identities = 167/216 (77%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 171857 TAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTC 171916 || ||| |||||||| || | |||||| ||| ||||| || ||||| | || | | || Sbjct 1496419 TATTACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATC 1496478 Query 171917 ATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATC 171976 || |||||||| ||||| ||||||||||| ||||| ||||| || |||||||||||||| Sbjct 1496479 TTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATC 1496538 Query 171977 TTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGT 172036 ||| ||||| ||| ||||| || ||||| || | ||| || || ||||| || || Sbjct 1496539 TTGGATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGT 1496598 Query 172037 TTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||| || ||||||||||| | || || |||||||| Sbjct 1496599 TTTTCCGGTTAATGTTTTTACAAAGATTTGCATTTT 1496634 >seq13 Length=2616835 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 109121 TAAAATATTTACATAAAATAAAAATAGTACATTGTGATTTAAAACCAGAGAATATATTAT 109180 || ||||||||||||||||||| ||||||||| | |||||||||||||| |||||||||| Sbjct 847789 TAGAATATTTACATAAAATAAATATAGTACATAGAGATTTAAAACCAGAAAATATATTAT 847848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135558746200