Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq6 178 4e-39 seq13 149 2e-30 seq7 122 3e-22 seq9 113 1e-19 seq10 84.2 6e-11 >seq6 Length=916956 Score = 178 bits (196), Expect = 4e-39 Identities = 776/1211 (64%), Gaps = 30/1211 (2%) Strand=Plus/Minus Query 155311 TTTCCAGAGCCGCAAAATAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCT 155370 |||| | ||| ||| |||| || || ||||| || | |||| | | |||||| || | Sbjct 508928 TTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCTATTTAATTCTTTAGCTTCTT 508869 Query 155371 CAGATGTAAATGCGATATCCATCTTGAAA-----AATGTGTCGGCTAAACCCTGAACTCC 155425 ||||| | ||| |||||| || ||| ||||| || ||||| || || ||||| Sbjct 508868 CAGATTCATATG-GATATC----TTAAAAGCATAAATGTATCTGCTAATCCTTGTACTCC 508814 Query 155426 AATACCGACTGGGCGATGCCTGTAATT-GCTCCTGCTTGTCTTCTTGTT-TGGGTAAAAA 155483 || || | || | ||| || | ||| | || | | |||||| ||| ||| || Sbjct 508813 TATTCCAATAGGTCTATGTCTTTTATTTGATCTTTCCG--CTTCTTTAACTGGATAATAA 508756 Query 155484 TTCACATCAATAATGTTATTTAAATTTGTAACCAATACCTTGGTTACGTCTGCTAATTTC 155543 || |||||||| |||| ||||||| || | | || || | || |||||| Sbjct 508755 TTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCATATAATTTT 508696 Query 155544 ACATAGTCAAATG--TTTTATCCTC-ATTTACAAACATACCAAGACCAATAGACGCCAGA 155600 | | | |||| |||| | ||| || ||||| | | | |||| || || | | Sbjct 508695 TTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCAATGGAAGCTAAA 508636 Query 155601 TTACATACCGCAGTCTCCTTGTCGTCGCTGTAT--TCTACAATCTCACAGCACAGGTTAG 155658 ||||| || || || | | || | ||||| || | ||| ||||| || | ||| Sbjct 508635 TTACAAACAGCTA-CTTCATCAGGT-GATGTATATTCAATAATTTCACAACATAAATTAC 508578 Query 155659 AACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGTATA 155718 | || || || |||||||| || || || |||||| ||||| ||||| || |||| Sbjct 508577 TGCATTTAATTGTTCCTAAATTTTTTTGATTCGATTTAGAATTACATGCATCTTTATATA 508518 Query 155719 GAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGG 155778 || ||||| || || || || || | | || | ||| | || | | Sbjct 508517 ACATATATGGTACACCAGTTTCTATTTGGCTTTGTAATATAGCAAACCATAAATCTTGTG 508458 Query 155779 CATTAATTTGCTTGTTGTATCTGCCTTCCGACT-CATATTTCATATACAGCGTTCGGTAA 155837 || |||| | || || | | || | || | ||||| |||| | || | Sbjct 508457 CAAGAATT-GTTTTTTTTCCAAGATTTTCTTCTTCGTATTTTGTATATAATTTTTCAAAT 508399 Query 155838 TCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCAAATT 155897 || ||||| | ||||| | || || || | | ||||| | | | ||| | Sbjct 508398 TCTTCACCCCAGGTTTCACTTAAGCCTGGACATTCGTTAGGGCACATTAAAGTCCAGTTC 508339 Query 155898 TTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAGGTCC 155957 ||||| | |||| | | |||||||| |||| ||||||||||||| || | || Sbjct 508338 TTATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATAAAATAAATCA 508279 Query 155958 CTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCA 156017 | || | | || || | || ||||| || | || ||||| ||||| |||||| Sbjct 508278 CGAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTCAAAAATATCT 508219 Query 156018 GGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTGCC---ACCCTGATCT 156074 | ||| ||| || | ||| | ||||||| ||| || || || || ||| |||||| Sbjct 508218 GAATGCCATGGTTCAACATATACAGCAAAAGAACCTTTTCTTTTTCCTCCACCTTGATCT 508159 Query 156075 ACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCA 156134 ||||| | || || | ||| || || | || ||| || | | |||||| || | ||| Sbjct 508158 ACATATCTTGCTGTATCATTAAAAACTCTTAACATCGGGACTAAACCATTTGATATACCA 508099 Query 156135 TTGGTTCCGCGAATATGCGAACCAGATGAGCG--AACATTATGAATATGTAGTCCAATAC 156192 || ||||| | || | ||| ||||| || || || | | | || |||| Sbjct 508098 TTAGTTCCTCTGATGTAAGAATTT--TGAGCTCTAATATCTTGTACAGCCACACCTATAC 508041 Query 156193 CACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAG 156252 | |||| |||| ||| || |||| ||||| || | || |||||||| || | Sbjct 508040 CTCCTGCTGTTTTACTAATCAATGCACATTGCTTTAATGTTTCAAATATACCTTCTATTG 507981 Query 156253 AATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGT 156312 ||||| || |||||||| || | |||| ||| | ||| |||| ||||||||| | | Sbjct 507980 AATCAGATTTCATTGATAATAAAAAGCATGAAGACATTTGGGGTCTTGGTGTTCCCGAAT 507921 Query 156313 TGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTCCT 156372 | |||| |||||| || |||||| ||||||| || | ||||| ||| || || || Sbjct 507920 TAAATAATGTAGGAGTAGCATGAGTAAAATATTTTTGTGACATTAAATGATAAGTTTCTA 507861 Query 156373 TAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCTGAG 156432 | ||| ||||||| | || || | ||||| || ||||| | | |||||||| Sbjct 507860 AAGCCTTTTCAAGATCATCTATATGTATTCCTATAGATACTCTCATTAATAAATGCTGAG 507801 Query 156433 GACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACC 156492 |||| || | ||| || ||| || | | ||| | | ||| | |||||||| | Sbjct 507800 GACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTTTCTAATGTTTTAAATC 507741 Query 156493 CGAAATAATCA 156503 | ||||||||| Sbjct 507740 CAAAATAATCA 507730 >seq13 Length=2616835 Score = 149 bits (164), Expect = 2e-30 Identities = 234/335 (70%), Gaps = 0/335 (0%) Strand=Plus/Plus Query 289018 CTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGT 289077 || ||||| ||| || ||||| ||||| ||||| |||| | ||| || | || | | Sbjct 1248404 CTTCTTTTAGAACCTACTGCATCTATTTCATCAATAAAAACAATACAAGGTGCATGCTTT 1248463 Query 289078 CTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACA 289137 | ||| || ||| | ||||||| | ||| || | ||||||| |||||||| || Sbjct 1248464 TTTGCAGTTTGAAAAAGCTCTCTTATTCTTCTTGCACCTACACCAACAAACATTTCTTCA 1248523 Query 289138 AATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCC 289197 ||||| ||| | ||| |||| || || | |||||||||||| ||||| | ||||| || Sbjct 1248524 AATTCTGAACCAGATGCTTGGATAAAGGGTACATTTGCTTCCCCTGCAATAGCCCTAGCA 1248583 Query 289198 AGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCC 289257 | | ||| || |||||||||||| || ||||| | || || || | |||||| Sbjct 1248584 ATTAATGTTTTTCCTGTTCCAGGTTCACCTGATAATAATATACCTTTGGGCAATTTTGCA 1248643 Query 289258 CCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATAT 289317 || || |||| || | | |||||| | || | ||||| | |||||| | | Sbjct 1248644 CCTATTTTAGTAAATTTATCTGAATTTTTTAAATAATCAATTATTTCTTGAAGTTCTTGT 1248703 Query 289318 TTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 ||| | |||||||||||| |||||| || ||||| Sbjct 1248704 TTTACTTCATCACATCCTTTTACATCTGCTAAAGT 1248738 >seq7 Length=1169068 Score = 122 bits (134), Expect = 3e-22 Identities = 274/404 (68%), Gaps = 21/404 (5%) Strand=Plus/Plus Query 380962 AATGTAAAAATCTGGAATGGTAATGGTAGTCGTGAGTTTTTAGATTCCCGTGGTCTAACC 381021 || |||| ||| ||| | | |||||| | | |||||||||||| | || Sbjct 995355 AACGTAAGAATATGGGAAGCTAATGGGACAAGAGAGTTTTTAGATAATAGGAAATTATTT 995414 Query 381022 AATAACGAAGAAGATGACCTTGGTCCTATTTACGGATTTCAGTGGAGACATTTTAACGCC 381081 ||| |||| ||||| | ||||| |||||||||||||| ||||| || ||| || Sbjct 995415 CATAGAGAAGTTAATGACTTAGGTCCAATTTACGGATTTCAATGGAGGCACTTTGGTGCT 995474 Query 381082 GATTATGATAATTGTG-ATAGTGATTATACTGGTAAGGGTGTCGACCAGTTAAAATATAT 381140 || ||| | | | || || |||||||| | ||| ||||| || ||||||||| |||| Sbjct 995475 GAATAT-ACAGATATGCATGCTGATTATAAAGATAAAGGTGTTGATCAGTTAAAAAATAT 995533 Query 381141 CATAGACC-AGCTAAAAA--ATCCTGAAACAAGAAATTCACGCCGACTAATTATGACTGC 381197 ||| | | |||||| |||| ||| | | | ||| | ||| | ||| Sbjct 995534 TATAAATTTAATTAAAAACGATCCG---ACATGTA------GACGAATTATTTTATGTGC 995584 Query 381198 GTGGAATCCTTGCCAGATTAA--TGATATGGCTTTACCACCTTGCCATATTTTATGCCAG 381255 |||||| | ||||| | | | ||||| ||||| ||||| ||||||||||| || Sbjct 995585 ATGGAATG--TAAAAGATTTAGATCAAATGGCATTACCTCCTTGTCATATTTTATGTCAA 995642 Query 381256 TTCAATGTTTCGGCTGGTAATAAGTTAAGTTGTGCTTTATATCAGCGTAGCGGTGATGTT 381315 || |||||| | ||| || ||| ||| | | ||||| | ||||| | Sbjct 995643 TTTTATGTTTTTGATGGAAAA---TTATCATGTATTATGTATCAAAGATCTTGTGATTTA 995699 Query 381316 GGTCTGGGTGTTCCATTCAATATTGCTTCGTATTCTATGCTTAC 381359 ||||| ||||||||||||||||||||||| |||||||| |||| Sbjct 995700 GGTCTTGGTGTTCCATTCAATATTGCTTCCTATTCTATATTTAC 995743 >seq9 Length=1345096 Score = 113 bits (124), Expect = 1e-19 Identities = 321/482 (67%), Gaps = 15/482 (3%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| || || | | || | || || ||||| |||||| |||| |||||| || Sbjct 544136 CTATCAAATCTTCCTGGTCTTGTAATAGCGGGATCTAAAATATCGACTCTATTTGTTCCT 544195 Query 288910 GCCAATACAACAA-TAGAT--TCGGTTTGCTTAAATCCATCCATACTTGTTAAA--ATTT 288964 || || ||||| | | ||| | | | | || |||||||| || || || | Sbjct 544196 GCTAAAACAACTACTTGATCATTAGATGTATGGAACCCATCCAT--TTCAACAAGCATCT 544253 Query 288965 GATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACC-CGAATCGCTCCtt 289023 |||| | || | ||| |||||||||||| || | || | ||| | | | || || Sbjct 544254 GATTTAAAGTATTTTCTCTTTCATCATTTCCTCCACCTGCAAAACCTCCTTTTGATCTTT 544313 Query 289024 tttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA 289083 || | ||||||||||||||||| || || ||||| | | | || | || || ||| || Sbjct 544314 TTCGT-CCAACAGCATCAATTTCATCTATAAAAATAATAGATGGTGCATGTTTTCTTGCT 544372 Query 289084 ATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCA 289143 |||||||| |||||| || | |||| ||| | || ||| | | ||| | ||| ||| Sbjct 544373 TGTGCAAATAGTTCTCTAACTCTTGATGGTCCGATTCCCACAAATACTTCAATAAAATCA 544432 Query 289144 --GAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAA 289201 | |||| | || || | ||||| ||||| || || || || | || | | Sbjct 544433 CTTCCACTGATA--TTAAAAAAAGGAACATTAGCTTCACCAGCAACAGCTTTTGCTAATA 544490 Query 289202 GTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAG 289261 || || || ||||| |||| || ||||| | || ||||||| |||||| || Sbjct 544491 AAGTTTTTCCGGTTCCCGGTGCACCACATAATAATGCACCTTTTGGTATTTTTGCACC-T 544549 Query 289262 CAGACTT-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTT 289320 | |||| |||||| | || | || ||||| || |||| ||| || ||| | |||| Sbjct 544550 AATACTTGATATTTTGCTGGATTTTTCAAAAAATCAACAAACTCCATAATTTCTTCTTTT 544609 Query 289321 GC 289322 || Sbjct 544610 GC 544611 >seq10 Length=1634725 Score = 84.2 bits (92), Expect = 6e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 408942 AAGTTCTATTAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCG 409001 ||| || |||| |||||| |||||||| |||||||||||| ||||| |||||||||||| Sbjct 353259 AAGATCCATTAGCTCAGT-GGTTAGAGCGTCGGTCTTATGTACCGAAGGTCGTGGGTTCG 353201 Query 409002 AGTCCCACATAGAACATT 409019 | ||||||| || |||| Sbjct 353200 AAACCCACATGGATCATT 353183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816864551143