Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq6 89.7 4e-13 >seq6 Length=916956 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| || ||||||||||| || ||||| ||||| | || || | Sbjct 465965 ATGCAGATTTTCGTAAAAACTTTAACCGGGAAAACAATTACTCTTGATGTTGAACCATCT 466024 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | || ||| || ||| ||||||||||| | || ||||| Sbjct 466025 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCTGATCAA 466084 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || ||| | |||| || || ||||| | ||||| | | |||| | | || |||||| Sbjct 466085 CAAAGATTAATTTTCGCTGGAAAACAATTAGAGGATGGAAGAACACTATCTGATTACAAC 466144 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||||| || ||||| || ||| | || || ||||| |||| || Sbjct 466145 ATTCAAAAAGAATCTACCTTACACTTAGTTTTAAGATTAAGAGGAGG 466191 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| || ||||||||||| || ||||| || || | || ||| | Sbjct 466193 ATGCAGATTTTCGTAAAAACTTTAACCGGGAAAACAATCACTCTTGATGTTGAGCCATCT 466252 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || ||| || ||| ||||||||||| | || ||||| Sbjct 466253 GATACCATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCTGATCAA 466312 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || ||| | |||| ||| || ||||| | || || | | |||| | | ||||||||| Sbjct 466313 CAAAGATTAATTTTTGCCGGAAAACAATTAGAAGATGGTAGAACACTATCTGACTACAAC 466372 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||||| || || || || ||| | || || ||||| |||| || Sbjct 466373 ATTCAAAAAGAATCGACTTTACACTTAGTTTTAAGATTAAGAGGAGG 466419 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||| || ||||| ||||| || ||||| ||||| | || || | Sbjct 466421 ATGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATTACTCTTGATGTTGAACCATCA 466480 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | || ||| || ||| ||||||||||| | || ||||| Sbjct 466481 GATACTATTGAAAACGTTAAAGCCAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAA 466540 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || ||| | |||| || || ||||| | || |||| | |||| | | ||||| ||| Sbjct 466541 CAAAGATTAATTTTCGCTGGAAAACAATTAGAAGACGGTAGAACATTATCTGACTATAAC 466600 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||||| || ||||| || || | || || ||||| |||| || Sbjct 466601 ATTCAAAAAGAATCTACCTTACATTTAGTTTTAAGATTAAGAGGAGG 466647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398876610408871