Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq6 219 7e-52 seq11 176 7e-39 >seq6 Length=916956 Score = 219 bits (242), Expect = 7e-52 Identities = 187/228 (82%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||| ||| ||||||||||||| ||||||||||||||| ||||||| ||| ||| | Sbjct 466422 TGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATTACTCTTGATGTTGAACCATCA- 466480 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||||||| |||| || ||| ||||| ||| ||||||||| || ||||| |||||| Sbjct 466481 GATACTATTGAAAACGTTAAAGCCAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAA 466540 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||| | ||||| || || ||||||||||| || |||||| ||| | || ||||| Sbjct 466541 CAAAGATTAATTTTCGCTGGAAAACAATTAGAAGACGGTAGAACATTATCTGACTATAAC 466600 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 || ||||||||||| || | |||||||| ||| |||||||||||||| Sbjct 466601 ATTCAAAAAGAATCTACCTTACATTTAGTTTTAAGATTAAGAGGAGGT 466648 Score = 208 bits (230), Expect = 1e-48 Identities = 183/228 (80%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| ||||||| ||||| || |||||||||||| ||||||| |||| | Sbjct 465966 TGCAGATTTTCGTAAAAACTTTAACCGGGAAAACAATTACTCTTGATGTTGAACCATCTG 466025 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| ||||||| ||| |||||| ||| ||||||||| |||||||| ||||||| Sbjct 466026 ATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCTGATCAAC 466085 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | ||||| || || ||||||||||| ||| ||||| || | ||||| || | Sbjct 466086 AAAGATTAATTTTCGCTGGAAAACAATTAGAGGATGGAAGAACACTATCTGATTACAACA 466145 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| || | || ||||| ||| ||||||||||||||| Sbjct 466146 TTCAAAAAGAATCTACCTTACACTTAGTTTTAAGATTAAGAGGAGGTA 466193 Score = 205 bits (226), Expect = 1e-47 Identities = 182/228 (80%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| ||||||| ||||| || |||||||| ||| ||||||| || | | Sbjct 466194 TGCAGATTTTCGTAAAAACTTTAACCGGGAAAACAATCACTCTTGATGTTGAGCCATCTG 466253 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| ||| |||||| ||| ||||||||| ||||| || ||||||| Sbjct 466254 ATACCATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCTGATCAAC 466313 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | |||||||| || ||||||||||| ||| |||||| || | || || || | Sbjct 466314 AAAGATTAATTTTTGCCGGAAAACAATTAGAAGATGGTAGAACACTATCTGACTACAACA 466373 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||||||| | || ||||| ||| ||||||||||||||| Sbjct 466374 TTCAAAAAGAATCGACTTTACACTTAGTTTTAAGATTAAGAGGAGGTA 466421 Score = 174 bits (192), Expect = 2e-38 Identities = 161/204 (79%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 146056 CAGGAAAAACAATTACTATTGATGTAGAACATAACGATACTATTCAAAATGTAAAAAATA 146115 |||||||||| || || ||||||| || | |||||| ||| ||||||| ||| || Sbjct 465762 CAGGAAAAACTATAACCCTTGATGTTGAGCCATCCGATACCATTGAAAATGTTAAAGCTA 465821 Query 146116 AAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAAC 146175 |||| ||| ||||||||| || ||||| |||||||||||| | |||||||| || || | Sbjct 465822 AAATTCAAGATAAAGAAGGTATCCCACCTGATCAACAAAGATTAATTTTTGCTGGAAAGC 465881 Query 146176 AATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATT 146235 ||||||| ||| ||||| ||| | || ||||| || ||||||||||| || | || | Sbjct 465882 AATTAGAAGATGGAAGAACATTATCTGACTATAACATTCAAAAAGAATCTACCTTACACT 465941 Query 146236 TAGTATTACGATTAAGAGGAGGTA 146259 |||| ||| ||||||||||||||| Sbjct 465942 TAGTTTTAAGATTAAGAGGAGGTA 465965 >seq11 Length=1720574 Score = 176 bits (194), Expect = 7e-39 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || ||||||||||||| ||||||||||| ||| ||||||| |||| | Sbjct 1496630 TGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGTTGAACCATCTG 1496571 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| ||| ||||| ||| ||||||||| ||||| || ||||||| Sbjct 1496570 ATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCCCCCTGATCAAC 1496511 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | ||||| || || ||||||||||| ||| ||||| ||| | || ||||| | Sbjct 1496510 AAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGAAGAACATTATCTGACTATAACA 1496451 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTA 146243 | |||||||| || || | ||||| ||| || Sbjct 1496450 TTCAAAAAGAGTCAACCTTACATTTGGTAATA 1496419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786166016743880