Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq11 150 1e-31 seq6 147 2e-30 >seq11 Length=1720574 Score = 150 bits (166), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 |||||||| | || || ||||||||||||||||| || | | || | ||| || Sbjct 1496423 ACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCT 1496482 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | |||||| ||||| | || |||||||| ||||| || ||||| || ||||| ||||| Sbjct 1496483 AATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGG 1496542 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757 | |||| ||| ||| |||| | || ||||| |||| || |||||||| || ||||| Sbjct 1496543 ATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTT 1496602 Query 29758 CCAGTTAAGGTTTTAACAAATATCTGCATTTT--AAAACGTA 29797 || ||||| ||||| ||||| || |||||||| ||||||| Sbjct 1496603 CCGGTTAATGTTTTTACAAAGATTTGCATTTTCGTAAACGTA 1496644 >seq6 Length=916956 Score = 147 bits (162), Expect = 2e-30 Identities = 153/198 (77%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 || ||||||||||||||||| ||||| | | || | ||| || | |||||| ||| Sbjct 466161 GTAGATTCTTTTTGAATGTTGTAATCAGATAGTGTTCTTCCATCCTCTAATTGTTTTCCA 466102 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTT 29708 || | || |||||||| ||||| || |||||||| ||||| ||||| |||||| | ||| Sbjct 466101 GCGAAAATTAATCTTTGTTGATCAGGTGGAATACCTTCTTTATCTTG-AATTTTAGCTTT 466043 Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768 ||| |||| | ||| ||||| |||| || |||||||| || ||||| || ||||| || Sbjct 466042 AACATTTTCAATAGTATCAGATGGTTCAACATCAAGAGTAATTGTTTTCCCGGTTAAAGT 465983 Query 29769 TTTAACAAATATCTGCAT 29786 ||| || || |||||||| Sbjct 465982 TTTTACGAAAATCTGCAT 465965 Score = 138 bits (152), Expect = 9e-28 Identities = 151/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 || ||||||||||||||||| || || | | || | | ||| || | |||||| || Sbjct 466389 GTCGATTCTTTTTGAATGTTGTAGTCAGATAGTGTTCTACCATCTTCTAATTGTTTTCCG 466330 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTT 29708 ||| | || |||||||| ||||| || |||||||| ||||| ||||| |||||| | ||| Sbjct 466329 GCAAAAATTAATCTTTGTTGATCAGGAGGAATACCTTCTTTATCTTG-AATTTTAGCTTT 466271 Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGT 29768 ||| |||| | || ||||| | || || |||||||| || ||||| || ||||| || Sbjct 466270 AACATTTTCAATGGTATCAGATGGCTCAACATCAAGAGTGATTGTTTTCCCGGTTAAAGT 466211 Query 29769 TTTAACAAATATCTGCAT 29786 ||| || || |||||||| Sbjct 466210 TTTTACGAAAATCTGCAT 466193 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || || | | || ||||| | || |||||||||||||||||||| || | Sbjct 466647 CCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATGTTATAGTCAGAT 466588 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | | || || | |||||| ||||| | || |||||||| ||||| || || Sbjct 466587 AATGTTCTACCGTCTTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGGG 466528 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||||| ||||| ||||| |||||| | ||| || |||| | ||| || || |||| || Sbjct 466527 ATACCTTCTTTATCTTG-AATTTTGGCTTTAACGTTTTCAATAGTATCTGATGGTTCAAC 466469 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || ||||| || ||||| ||||| || || || ||||| Sbjct 466468 ATCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 466421 Score = 107 bits (118), Expect = 1e-18 Identities = 128/171 (75%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 29590 GTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCA 29649 || |||||||||||||||||||| || | | || | ||| || | ||| || ||| Sbjct 465933 GTAGATTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCTAATTGCTTTCCA 465874 Query 29650 GCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTT 29708 ||| | || |||||||| ||||| || || ||||| ||||| ||||| |||||| | ||| Sbjct 465873 GCAAAAATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTATCTTG-AATTTTAGCTTT 465815 Query 29709 GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCC 29759 ||| |||| | || || || | || || ||||| ||||||||||| || Sbjct 465814 AACATTTTCAATGGTATCGGATGGCTCAACATCAAGGGTTATAGTTTTTCC 465764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385219016900499