Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq7 120 4e-22 seq3 111 2e-19 seq6 91.5 2e-13 seq13 82.4 1e-10 >seq7 Length=1169068 Score = 120 bits (132), Expect = 4e-22 Identities = 311/467 (67%), Gaps = 19/467 (4%) Strand=Plus/Plus Query 168656 TGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATATATTGACTG 168715 ||| |||||||||||||| |||||||||||||| || || ||| |||||| || | Sbjct 995429 TGACTTAGGTCCAATTTACGGATTTCAATGGAGGCACTTTGGTGCTGAATATACAGA-TA 995487 Query 168716 TG-ATACAGATTACACCGGACAAGGAGTAGACCAATTAAGTCAAACTATAAATACTTTAC 168774 || || | ||||| | | |||| || || || |||| | | ||||||| | Sbjct 995488 TGCATGCTGATTATAAAGATAAAGGTGTTGATCAGTTAAAAAATATTATAAATTTAATTA 995547 Query 168775 ACAACAATCCGGAAAATAGAAGAATATTAATTAATAGT---TGGGATGTACCACAACTTG 168831 | ||| ||||| | |||| |||| || || || || ||| ||||| | | | | Sbjct 995548 AAAACGATCCGACATGTAGACGAAT--TATTTTAT-GTGCATGGAATGTAAAAGATTTAG 995604 Query 168832 ATAAAATGGTTCTTCCCCCTTGTCACACTTTAGTGCAATTTTATGTA----AGGAAAAAA 168887 || |||||| | || |||||||| | |||| ||||||||||| | | |||| Sbjct 995605 ATCAAATGGCATTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTTGATGGAAAAT 995664 Query 168888 TCAATCTTAGATTGTCAGTTGTATCAAAGATCAGCTGATTTAGGATTAGGAGTACCTTAT 168947 | ||| | ||| | |||||||||||| ||||||||| | || || || | Sbjct 995665 T--ATCATGTATTAT-----GTATCAAAGATCTTGTGATTTAGGTCTTGGTGTTCCATTC 995717 Query 168948 AATATTGGATTTTATTCATTTTTAACACTTGTGCTAAGTAAATGGTGTAATTTGACGCCT 169007 ||||||| | ||||| | || ||| | || || || |||||||| || Sbjct 995718 AATATTGCTTCCTATTCTATATTTACATATATGATAGCACAAGTATGTAATTTACAACCA 995777 Query 169008 GGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAACCATGTTGAACCTTTA 169067 | | ||||| ||| || ||| ||| ||| || ||| || ||||||||| ||| Sbjct 995778 GCTGAATTTATACATGTATTGGGAAATGCTCATGTTTATAATAATCATGTTGAAAGCTTA 995837 Query 169068 AAGGTTCAATTGAAAAGAAAACCATATTCTTTTCCAAATGTTAAATT 169114 || || || || || |||| ||| ||| |||| || | | ||||||| Sbjct 995838 AAAGTCCAGTTAAATAGAACACCCTATCCTTTCCCTACTCTTAAATT 995884 >seq3 Length=624158 Score = 111 bits (122), Expect = 2e-19 Identities = 146/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 193790 TAAAATTTTTATAGGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGATAAAAT 193849 |||||| |||||||| ||||| | |||||| | | ||||||||||| | |||||||| Sbjct 500466 TAAAATATTTATAGGACCAACATTTTATCAAAGATTAAAACATATGGTGGAAGATAAAAT 500525 Query 193850 GCATGCTAGAAGTCATGGACAAGTGACTA-CTTTACATCGACAACCAAATTGTGGTCGTT 193908 ||||| |||||| |||| | |||| ||||| ||||||||| || | | Sbjct 500526 ACATGCCAGAAGTAGAGGACCTCTAACTATGATTACA-AGACAACCAACAGAAGGAAGAT 500584 Query 193909 CTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAGAAAGACTGTATTTTAGTTCATGGTG 193968 | || ||| ||||||||||||||||||||||| | ||| ||||| || |||||| Sbjct 500585 CAAGAGATGGTGGTTTAAGATTTGGAGAAATGGAAAGAGATTGTATGATATCTCATGGAT 500644 Query 193969 CTACTCAATTCTTGAATGAA 193988 || || || | || || ||| Sbjct 500645 CTGCTAAAATGTTAAAGGAA 500664 >seq6 Length=916956 Score = 91.5 bits (100), Expect = 2e-13 Identities = 117/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 193794 ATTTTTATAGGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGATAAAATGCAT 193853 |||||||| || |||| |||||||| | |||||||||||| | |||||||| ||| Sbjct 263033 ATTTTTATGGGTCCAATATATTATCAGAAATTAAAACATATGGTTCAAGATAAAATTCAT 262974 Query 193854 GCTAGAAGTC-ATGGACAAGTGACTACTTTACATCGACAACCAAATTGTGGTCGTTCTCA 193912 |||||| || | | | || | | || ||| |||||||||| | ||||| || | Sbjct 262973 GCTAGATCTCGAGGTCCTAGGCAATTATTAACA-CGACAACCAACTGAAGGTCGATCAAA 262915 Query 193913 AGGTGGAGGTTTAAGATTTGGAGAAATGGAGAAAGACTG 193951 || ||||| |||||| |||| |||||||| | ||| || Sbjct 262914 AGAAGGAGGATTAAGACTTGGTGAAATGGAAAGAGATTG 262876 >seq13 Length=2616835 Score = 82.4 bits (90), Expect = 1e-10 Identities = 149/209 (71%), Gaps = 18/209 (9%) Strand=Plus/Minus Query 51838 AAGTTGGAGACTTGGTTAAAAGACA-ATTGATGGATGGTGATGATGTACTATTAAATAGG 51896 || |||| || | || ||||||| ||| || |||||||| |||| |||| ||||| Sbjct 1835622 AAATTGGTGATATAGTAGAAAGACATATTTGTG-ATGGTGATATTGTATTATTTAATAGA 1835564 Query 51897 CAACCAAC---ACTTCATAAAGCTTCTATGCAAAGTTTTAAAGTTAAAATTCAACCAGTA 51953 |||||| | || || || | |||| || ||||| | | || | | || Sbjct 1835563 CAACCATCTTTACATCGTATGTCAATTATGT---GTCATAAAGCTCGAGTT-ATGGATTA 1835508 Query 51954 -AAAACATTTAA----AATGAATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATG 52008 ||||||||| ||||||| || |||| || |||||||||| |||||||||| Sbjct 1835507 TAAAACATTTCGCTTTAATGAATGTG--TATG--TAGTCCATATAATGCAGATTTTGATG 1835452 Query 52009 GGGATGAAATGAATTTACATGTTCCTCAA 52037 |||||||||||||||||||||| |||||| Sbjct 1835451 GGGATGAAATGAATTTACATGTACCTCAA 1835423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635177290350920