Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq7 109 7e-19 seq3 107 3e-18 seq10 96.9 5e-15 seq6 89.7 7e-13 >seq7 Length=1169068 Score = 109 bits (120), Expect = 7e-19 Identities = 422/644 (66%), Gaps = 23/644 (4%) Strand=Plus/Plus Query 180357 AATTTGATTTAAGTGAAGGAATTGTACCACTTCTTACAACaaaaaaaaTAGTTTATAAAA 180416 ||||| ||||||||||| ||| | ||| | | |||||||||||| || ||| ||| | Sbjct 995233 AATTTAATTTAAGTGAAT--ATTTT-CCATTATTAACAACAAAAAAATTA-TTTGTAAGA 995288 Query 180417 A-TATTCTTAAAGAATTATTATGGATAATGAAAGGTTTAACAAATTCTAATTTGTTAAAT 180475 ||| || |||| || ||||| | || | || ||||||| ||| ||| Sbjct 995289 GGTATCATTGAAGAGTTGCTATGGTTTATAAGGGGAGAAACAAATGGAAATACATTATTA 995348 Query 180476 GATATTGGTGTTAAAGTGTGGAATGATAATGGTTCGCGTAAGTTTTTAGATTCTTGTGGA 180535 || | || | | | ||| | | |||||| | | ||||||||||| | | | Sbjct 995349 GAAAAAAACGTAAGAATATGGGAAGCTAATGGGACAAGAGAGTTTTTAGATAATAGGAAA 995408 Query 180536 TTTCATTT--TCGAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACATG 180593 || |||| | || ||| ||| ||||| |||||||| |||||||||||||| || Sbjct 995409 TT--ATTTCATAGAGAAGTTAATGACTTAGGTCCAATTTACGGATTTCAATGGAGGCACT 995466 Query 180594 CAGGAGCTCAATATATTGACTGTG-ATACCAACTATATCGGGCAAGGTATAGACCAATTA 180652 || ||| |||||| || | || || | | |||| | ||||| | || || ||| Sbjct 995467 TTGGTGCTGAATATACAGA-TATGCATGCTGATTATAAAGATAAAGGTGTTGATCAGTTA 995525 Query 180653 AGCCAAGTTATAGAAACTATAAAAAATAATCCCGAATGCCGAAGAATAATCATAGATAGT 180712 | | ||||| | || ||||| |||| ||| || |||| || || | Sbjct 995526 AAAAATATTATAAATTTAATTAAAAACGATCCGACATGTAGACGAATTATTTTATGTGCA 995585 Query 180713 TGGAATGTATCACAATTACCAGATATGGCTCTTCCACCATGTCACTGTTTGGTACAATTT 180772 ||||||||| | | ||| | ||||| | || || ||||| ||| |||||| Sbjct 995586 TGGAATGTAAAAGATTTAGATCAAATGGCATTACCTCCTTGTCATATTTTATGTCAATTT 995645 Query 180773 TATGTTAGAAATA-AAATTTATTTAG-ATTGCCAATTGTATCAAAGATCTGCAGATTTAG 180830 |||||| || ||| |||| | ||| |||||||||||||| ||||||| Sbjct 995646 TATGTTTTTGATGGAAAATTATCATGTATTA-----TGTATCAAAGATCTTGTGATTTAG 995700 Query 180831 GATTAGGTGTACCATATAATATTGCTTTCTATTC-AT-TTTTGGTATGTGTTCTCTCAAA 180888 | | ||||| |||| |||||||||| |||||| || ||| ||| || | | | || Sbjct 995701 GTCTTGGTGTTCCATTCAATATTGCTTCCTATTCTATATTTACATATATGATAGCAC-AA 995759 Query 180889 GTGGTGCAATTTAACCCCTGGAAAATTTATTCACACTTTTGGGGATGTTCATGTATATTC 180948 || || |||||| || | ||||||| || || || ||| |||||| ||| Sbjct 995760 GT-ATGTAATTTACAACCAGCTGAATTTATACATGTATTGGGAAATGCTCATGTTTATAA 995818 Query 180949 TAACCATATTGACCAATTAAAAATTCAATTAAGCAGAA-ACCCT 180991 ||| ||| |||| |||||| | || |||| |||| ||||| Sbjct 995819 TAATCATGTTGAAAGCTTAAAAGTCCAGTTAAATAGAACACCCT 995862 >seq3 Length=624158 Score = 107 bits (118), Expect = 3e-18 Identities = 125/166 (75%), Gaps = 2/166 (1%) Strand=Plus/Plus Query 201917 TAAAATTTTTATAGGCCCAACATACTATCATCGTCTTAAACATATGGTTAAGGATAAAAT 201976 |||||| |||||||| ||||||| ||||| | | ||||||||||| | |||||||| Sbjct 500466 TAAAATATTTATAGGACCAACATTTTATCAAAGATTAAAACATATGGTGGAAGATAAAAT 500525 Query 201977 GCATGCGAGAAGTCATGGTCAAGTAAC-AACATTACATCGTCAACCAAACTGTGGTCGGT 202035 ||||| |||||| || | |||| | |||||| | ||||||| || | | Sbjct 500526 ACATGCCAGAAGTAGAGGACCTCTAACTATGATTACA-AGACAACCAACAGAAGGAAGAT 500584 Query 202036 CCCAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTGTAT 202081 | || |||||| |||||||||||||||||||||| ||||||||| Sbjct 500585 CAAGAGATGGTGGTTTAAGATTTGGAGAAATGGAAAGAGATTGTAT 500630 Score = 89.7 bits (98), Expect = 7e-13 Identities = 124/170 (73%), Gaps = 8/170 (5%) Strand=Plus/Plus Query 201076 TAAATTATCCTCAAAAACCACTTGT---TACAACTGACATTGCAGAAT-TTAATGGTCTA 201131 || ||||||| ||||||||| | || ||||| | | |||||| || | | || Sbjct 499265 TATATTATCCACAAAAACCATTAGTATGTACAAAAGCTA---CAGAATATTTACATTTTA 499321 Query 201132 AATGAATACCCCAATGGTATTAATGCAATTGTAGCAATTGCATGTTACACTGGATACAAT 201191 || || | || ||| || |||||||||||||||||| ||||| || ||||||||| Sbjct 499322 AA-GATTTACCAGCTGGAATAAATGCAATTGTAGCAATTATGTGTTATACAGGATACAAT 499380 Query 201192 CAAGAAGATAGTGTTATTCTTAATAAAGCATCTATTGAAAGAGGTTTATT 201241 |||||||||||| | || | ||| || |||| ||||| | || ||||| Sbjct 499381 CAAGAAGATAGTTTGATCATGAATCAATCATCCATTGATCGGGGGTTATT 499430 >seq10 Length=1634725 Score = 96.9 bits (106), Expect = 5e-15 Identities = 176/255 (69%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 172888 TAAGGTTGCTCAGTTGAGTGGTTACATTGCAGAACAAACTGATTATAAACATGGTGAACA 172947 ||| || || ||| | |||||| ||||||||||| | || ||| | ||||||||| Sbjct 515280 TAAAGTCGCGCAGCTTGTTGGTTATATTGCAGAACATAGTGCATATCATCATGGTGAATC 515339 Query 172948 AAACCTTTGTGAAACTATAATAAAATTTGCACAGGATTTTGTAGGTACAAATAACATAAC 173007 | | ||||||| ||||| | || || ||||| ||| |||| || |||| Sbjct 515340 ATCATTACAACAAACTATTATAAATATGGCGCAAACATTTGTCGGTTCAAACAATATAAA 515399 Query 173008 ATTACTTGAACCAGATGGTCAGTTTGGTACTAGACTTGAAGGAGGTAAAGATTCAGCCGC 173067 || || ||||| ||| || ||||||| |||| ||||| ||||| ||| || | || Sbjct 515400 TTTTCTAGAACCCTGTGGACAATTTGGTAGTAGAAAAGAAGGTGGTAAGGATGCATCAGC 515459 Query 173068 ATCAAGGTATATTTATACTAAAC-CGCATAAAATTTTAAAATATATATTTAGAGAAGAAG 173126 | | |||||||| | ||| |||| |||| | | || || |||||||| ||| | Sbjct 515460 AGCTAGGTATATATTTACAAAACTTGCATCATCTACTAGAA-GTATATTTAATGAATTTG 515518 Query 173127 ATGACCCTATTTTAA 173141 | || || ||||||| Sbjct 515519 ACGATCCAATTTTAA 515533 >seq6 Length=916956 Score = 89.7 bits (98), Expect = 7e-13 Identities = 119/160 (74%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 201921 ATTTTTATAGGCCCAACATACTATCATCGTCTTAAACATATGGTTAAGGATAAAATGCAT 201980 |||||||| || |||| ||| ||||| | |||||||||||| | |||||||| ||| Sbjct 263033 ATTTTTATGGGTCCAATATATTATCAGAAATTAAAACATATGGTTCAAGATAAAATTCAT 262974 Query 201981 GCGAGAAGTCATGGT-CAAGTAACAACATTACATCGTCAACCAAACTG-TGGTCGGTCCC 202038 || ||| || ||| | || | | |||| || ||||| ||||| ||||| || Sbjct 262973 GCTAGATCTCGAGGTCCTAGGCA-ATTATTAACACGACAACC-AACTGAAGGTCGATCAA 262916 Query 202039 AAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTG 202078 ||| || ||||||||| |||| |||||||||| |||||| Sbjct 262915 AAGAAGGAGGATTAAGACTTGGTGAAATGGAAAGAGATTG 262876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655279680551000