Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq6 138 1e-27 seq11 93.3 4e-14 >seq6 Length=916956 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| ||| | ||||||||||| | |||||||||||||| ||||| || || Sbjct 466647 CCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATGTTATAGTCAGAT 466588 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| || |||||| | |||||| ||||| | || | | ||| ||||| || || Sbjct 466587 AATGTTCTACCGTCTTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGGG 466528 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || |||||||| || |||||| ||| | | ||| | || |||| ||||| || Sbjct 466527 ATACCTTCTTTATCTTGAATTTTGGCTTTAACGTTTTCAATAGTATCTGATGGTTCAACA 466468 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 |||| ||| | || || ||||| |||||||||||||| ||||||||| || Sbjct 466467 TCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCATACCT 466417 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| ||| | |||||||| || | |||||||||||||| ||||||||||| Sbjct 466191 CCTCCTCTTAATCTTAAAACTAAGTGTAAGGTAGATTCTTTTTGAATGTTGTAATCAGAT 466132 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| || || || | |||||| ||||| | || | | ||| ||||| || || Sbjct 466131 AGTGTTCTTCCATCCTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGGA 466072 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || |||||||| || |||||| ||| | | ||| | || || | ||||| || Sbjct 466071 ATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGATGGTTCAACA 466012 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 |||| ||| | || || ||||| || ||||||||||| || |||||| || Sbjct 466011 TCAAGAGTAATTGTTTTCCCGGTTAAAGTTTTTACGAAAATCTGCATACCT 465961 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| ||| | |||||||| || | || ||||||||||| |||||||| || Sbjct 466419 CCTCCTCTTAATCTTAAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCAGAT 466360 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||| || ||||| | |||||| || ||| | || | | ||| ||||| ||||| Sbjct 466359 AGTGTTCTACCATCTTCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGAGGA 466300 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || |||||||| || |||||| ||| | | ||| | || || | || || || Sbjct 466299 ATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATGGTATCAGATGGCTCAACA 466240 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 137415 |||| ||| | || || ||||| || ||||||||||| || |||||| || Sbjct 466239 TCAAGAGTGATTGTTTTCCCGGTTAAAGTTTTTACGAAAATCTGCATACCT 466189 Score = 86.0 bits (94), Expect = 6e-12 Identities = 680/1081 (63%), Gaps = 42/1081 (4%) Strand=Plus/Minus Query 150746 AAAACACGTCTCAAAAACAAATTACTGTGAAACGGTTCAAATGACTCGTTGTTGTTGAGT 150805 ||||||||||| || | | ||||| | | |||||||| || || || || | Sbjct 509196 AAAACACGTCTGTAATAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAA 509137 Query 150806 ATTTGTGCGGTCGTGGCCGTCGGCATGTACGCCACAAGCAATGAATTACGTAATCCGTAT 150865 ||||||| || | || || ||||| || | ||| | ||||| | |||||||| | Sbjct 509136 ATTTGTGACGTTGAAGCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCGTGT 509077 Query 150866 TTTTGTATATTTATTTTCAACTGTGACCAGTCCCATAACGAAGTCGGTACCGT---ATTC 150922 || ||| ||| |||| || ||| ||||| | | | ||| | |||| Sbjct 509076 TTACTTATTTTTTTTTTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTC 509017 Query 150923 CACAAATCGTATTGCAATATTCCTTCGCTCGCTTTGCTACCGGCAAACGTGCTATAAGGC 150982 |||| ||| |||| |||||||||| ||| ||| ||||| | | | ||| || Sbjct 509016 CACATATCAAATTGTAATATTCCTTGGCTTGCTGGACTACCTTGATATGATTCATATGGT 508957 Query 150983 TCACTAACAGATGCCAGTTCGTAACTGGCCT--CGAGCGCAGCATGATACACAGTTTCAG 151040 |||| || ||||| ||| ||| | | | | | ||||||| ||||| ||||||| Sbjct 508956 CCACTTACTTGTGCCAATTC--AACAGACATTTCTAAAGCAGCATAATACATAGTTTCAA 508899 Query 151041 CAATTTGTTTATTCAATAGAACGGCAGCATCGCTCA----CGTACGG-TATGCGCAACAT 151095 ||| | |||| ||| | ||| || ||| | || || ||| | || | Sbjct 508898 ATATTCTTCTATTTAATT---CTTTAGCTTCT-TCAGATTCATATGGATAT-CTTAAAAG 508844 Query 151096 AACAAATGCATCGGCCAAACCTTGAATGCCTATGCCGATGGGACGATGGCGCATATTAGA 151155 | ||||| ||| || || ||||| | ||||| || || || | ||| | |||| || Sbjct 508843 CATAAATGTATCTGCTAATCCTTGTACTCCTATTCCAATAGGTCTATGTCTTTTATTTGA 508784 Query 151156 tttttttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATTCAAA---CTATT 151212 | ||| || || || || || |||| | ||||||||||||| ||| ||| | Sbjct 508783 TCTTTCCGCTTCTTTAACTGGATAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGT 508724 Query 151213 CACTACATGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAAG------TATCATTATT 151266 | || || || | | | | ||| || ||||| ||| | || ||| Sbjct 508723 AA-TA-ATTTTAGTA-ATATCATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATC 508667 Query 151267 GATATATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCA 151326 | | |||| | ||||| || |||| |||||| || || ||| || || | Sbjct 508666 AACAAATTTGCATAATGCAATGGAAGCTAAATTACAAACAGCTACTTCATCAGGTGATGT 508607 Query 151327 ATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATT 151386 ||||| | ||||| ||| ||||| |||||||| || ||| |||| ||||||| Sbjct 508606 ATATTCAATAATTTCACAACATAAATTACTGCATTTAATTGTTCCTAAATTTTTTTGATT 508547 Query 151387 GCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAAT 151446 ||| || || || || || |||||||| || ||| || ||||| ||| | Sbjct 508546 CGATTTAGAATTACATGCATCTTTATATAACATATATGGTACACCAGTTTCTATTTGGCT 508487 Query 151447 TTCTATAAT-GTTTCGCATTAATGTAACCGCGGGCATT---TGCTCGCGAAACTGGCCTT 151502 || || || | ||| ||| | || | ||| | | | || | ||| Sbjct 508486 TTGTAATATAGCAAACCATAAATCTTGT-GCAAGAATTGTTTTTTTTCCAAGATTTTCTT 508428 Query 151503 TATCCTCATAATGTTTGTACCAGTATTCAAAGTCATCACCATACGTATCG-TTGAGCTTA 151561 || | || ||| | || | | |||||| || ||||| | || || || ||| | Sbjct 508427 CTTCGT-ATTTTGTATATA--ATTTTTCAAATTCTTCACCCCAGGTTTCACTTAAGCCT- 508372 Query 151562 GGACACTCGTTAGGACACATTAATGACCATATACCGTTTTCTTCAACGCGTTTCATAAAT 151621 ||||| |||||||| |||||||| | ||| | ||||| | || | |||||||||| Sbjct 508371 GGACATTCGTTAGGGCACATTAAAGTCCAGTTCTTATTTTCCTTTACTCTTTTCATAAAT 508312 Query 151622 ATATCCGGAACCCATAATGCGTTCATCAAATCACGCGCTTTGGTGTCTTCGCTGCCAATG 151681 | ||| || ||||| | || | | |||||||| ||| | ||||| | ||| Sbjct 508311 AAATCAGGTACCCAAATAGCATAAAATAAATCACGAGCTCTCAATTCTTCTTTACCATGA 508252 Query 151682 TTTCGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCACGGTTCAACGTACACTGCT 151741 ||| | | | ||||| || | ||| || ||||||| |||||||| || || || Sbjct 508251 TTTTTTCTTAAATCTAAAAATTCAAAAATATCTGAATGCCATGGTTCAACATATACAGCA 508192 Query 151742 TGGGCGCCTTTTCGCTT---GCCACCTTGATCCACGTGACGCACCATATTATTAAAAACT 151798 | ||||||| || ||||||||||| || | | | ||| |||||||||| Sbjct 508191 AAAGAACCTTTTCTTTTTCCTCCACCTTGATCTACATATCTTGCTGTATCATTAAAAACT 508132 Query 151799 C 151799 | Sbjct 508131 C 508131 >seq11 Length=1720574 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 137262 || ||||| | || || |||||||| ||||| || || | ||| || ||||| Sbjct 1496423 ACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCT 1496482 Query 137263 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 137322 | |||||| ||||| | || | | ||| ||||| || || || |||||||| || Sbjct 1496483 AATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGG 1496542 Query 137323 ATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTG 137382 |||||| ||| | | ||| | || || | ||||| || |||| ||| | || || Sbjct 1496543 ATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTT 1496602 Query 137383 CCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||||| ||||||||||| || |||||||| Sbjct 1496603 CCGGTTAATGTTTTTACAAAGATTTGCAT 1496631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488543761834800