Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq6 206 5e-48 seq11 178 3e-39 >seq6 Length=916956 Score = 206 bits (228), Expect = 5e-48 Identities = 183/229 (80%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| || | | ||||||||| | ||| |||||||| || || || || |||| Sbjct 466421 TACCTCCTCTTAATCTTAAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCAG 466362 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 |||| ||||||| ||||||| ||||||||| ||||| |||| |||||||||||| |||| Sbjct 466361 ATAGTGTTCTACCATCTTCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGAG 466302 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| ||||||||||| || ||||| ||||||||||| |||||| || || | Sbjct 466301 GAATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATGGTATCAGATGGCTCAA 466242 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | ||| || || || || || || || ||||| || |||||||| Sbjct 466241 CATCAAGAGTGATTGTTTTCCCGGTTAAAGTTTTTACGAAAATCTGCAT 466193 Score = 201 bits (222), Expect = 2e-46 Identities = 182/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| || | | ||||||||| | ||||||||||| || || || ||||||| Sbjct 466193 TACCTCCTCTTAATCTTAAAACTAAGTGTAAGGTAGATTCTTTTTGAATGTTGTAATCAG 466134 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 |||| |||| || || |||| |||||||||||| || |||| |||||||||||| || | Sbjct 466133 ATAGTGTTCTTCCATCCTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTG 466074 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| ||||||||||| || ||||| ||||||||||| |||||| ||||| | Sbjct 466073 GAATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATAGTATCAGATGGTTCAA 466014 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | ||| || || || || || || || ||||| || |||||||| Sbjct 466013 CATCAAGAGTAATTGTTTTCCCGGTTAAAGTTTTTACGAAAATCTGCAT 465965 Score = 190 bits (210), Expect = 4e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||||||||| || | | |||||| || | ||||||||||| || || ||||| ||||| Sbjct 466648 ACCTCCTCTTAATCTTAAAACTAAATGTAAGGTAGATTCTTTTTGAATGTTATAGTCAGA 466589 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || ||||||||||||||| |||||||||||| || |||| |||||||||||| || || Sbjct 466588 TAATGTTCTACCGTCTTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGG 466529 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || ||||| ||||||||||| || ||||| || |||||||| ||||| ||||| || Sbjct 466528 GATACCTTCTTTATCTTGAATTTTGGCTTTAACGTTTTCAATAGTATCTGATGGTTCAAC 466469 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || || || || || || || ||||| || || ||||| Sbjct 466468 ATCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 466421 Score = 174 bits (192), Expect = 3e-38 Identities = 161/204 (79%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||||||||| || | | ||||||||| | ||||||||||| || || ||||| |||| Sbjct 465965 TACCTCCTCTTAATCTTAAAACTAAGTGTAAGGTAGATTCTTTTTGAATGTTATAGTCAG 465906 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| |||| || ||||||| ||| ||||||||||| |||| |||||||||||| || | Sbjct 465905 ATAATGTTCTTCCATCTTCTAATTGCTTTCCAGCAAAAATTAATCTTTGTTGATCAGGTG 465846 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| ||||||||||| || ||||| ||||||||||| ||||| || || | Sbjct 465845 GGATACCTTCTTTATCTTGAATTTTAGCTTTAACATTTTCAATGGTATCGGATGGCTCAA 465786 Query 82762 CTTCCAAAGTTATCGTCTTGCCTG 82785 | || | ||||| || || |||| Sbjct 465785 CATCAAGGGTTATAGTTTTTCCTG 465762 >seq11 Length=1720574 Score = 178 bits (196), Expect = 3e-39 Identities = 158/198 (80%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 82614 GTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCA 82673 || || ||||| || || ||||| ||||||| |||| || ||||||| |||||||||| Sbjct 1496435 GTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTCCATCTTCTAATTGTTTTCCA 1496494 Query 82674 GCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT 82733 || || |||| |||||||||||| || || |||||||| |||||||| || |||||||| Sbjct 1496495 GCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGGATTTTTGCTTTA 1496554 Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793 ||||||||||| |||||| ||||| || || | ||| || || || || || || || Sbjct 1496555 ACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTTTCCGGTTAATGTT 1496614 Query 82794 TTTACAAATATCTGCATT 82811 |||||||| || |||||| Sbjct 1496615 TTTACAAAGATTTGCATT 1496632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981826709393221