Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq6 286 8e-72 seq7 111 4e-19 seq13 100 7e-16 seq8 95.1 3e-14 seq10 86.0 1e-11 >seq6 Length=916956 Score = 286 bits (316), Expect = 8e-72 Identities = 642/955 (67%), Gaps = 17/955 (2%) Strand=Plus/Plus Query 110215 TTGTTACAAAGGAAGTATTTAATGTCGTAAAGAAACATAAAACAAAACTAAATAATATTA 110274 || ||| || ||||||| | || | | | | |||||||| ||||||| | Sbjct 507645 TTATTAGTAAAGAAGTATATGATTTTATTATGGAACATAAAGATCGTTTAAATAAAGAAA 507704 Query 110275 TCGATTATACTCGTGACTATGATATTGACTATTTTGGTTTCAAAACTCTTGAACGTGCTT 110334 | |||||||| | || | || ||| |||||||| || ||||| | ||| | ||| Sbjct 507705 TAGATTATACAAGAGATTTCAATTATGATTATTTTGGATTTAAAACATTAGAAAGGTCTT 507764 Query 110335 ATTTACTTCGTGTCAATGGCGAGATCATTGAACGTCCTCAACACATGTTTCTTCGTGTTG 110394 | ||| | ||| | ||| | || |||||||||||||| || | || | | || Sbjct 507765 ACTTATTACGTATTAATAATAAAATTATTGAACGTCCTCAGCATTTATTAATGAGAGTAT 507824 Query 110395 CGATTGGTATTCATGGACATGATATTAAAGCTGTTATTGAATGTTATGATGTATTAAGTA 110454 | || || || ||| | ||||| || || | | | ||| |||| || || | Sbjct 507825 CTATAGGAATACATATAGATGATCTTGAAAAGGCTTTAGAAACTTATCATTTAATGTCAC 507884 Query 110455 AAAAGAAAGCTATTCATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAAT 110514 |||| | || ||||||||||||||| ||||||| | ||||| || ||| Sbjct 507885 AAAAATATTTTACTCATGCTACTCCTACATTATTTAATTCGGGAACACCAAGACCCCAAA 507944 Query 110515 TGGCTTCTTGCTTTCTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTC 110574 || |||| |||||| | || ||| || |||||| || |||||||| | ||| | Sbjct 507945 TGTCTTCATGCTTTTTATTATCAATGAAATCTGATTCAATAGAAGGTATATTTGAAACA- 508003 Query 110575 TTAAAGAAAC-TGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGAT 110633 |||||| || ||| | ||| ||||| | ||||| || ||| | || || ||| Sbjct 508004 TTAAAGCAATGTGCATTGATTAGTAAAACAGCAGGAGGTATAGGTGTGGCTGTACAAGAT 508063 Query 110634 ATTCG--CTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTC 110691 ||| | ||||||| | | ||| | | | || ||| |||| ||| | || | Sbjct 508064 ATTAGAGCTCAAAATT--CTTACATCAGAGGAACTAATGGTATATCAAATGGTTTAGTCC 508121 Query 110692 CAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---AAGAGAA 110748 | ||||||||||| || || || || |||| |||||| |||||||||| || |||| Sbjct 508122 CGATGTTAAGAGTTTTTAATGATACAGCAAGATATGTAGATCAAGGTGGAGGAAAAAGAA 508181 Query 110749 ATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAAC 110808 | || || |||||| | ||| | ||||| |||||||||||||| |||||||| ||||| Sbjct 508182 AAGGTTCTTTTGCTGTATATGTTGAACCATGGCATTCAGATATTTTTGAATTTTTAGATT 508241 Query 110809 TTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGA 110868 | | |||||||| || |||||| ||||| ||||||||||||||||| || ||| Sbjct 508242 TAAGAAAAAATCATGGTAAAGAAGAATTGAGAGCTCGTGATTTATTTTATGCTATTTGGG 508301 Query 110869 TTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTC 110928 | | |||||||| |||||| | || | |||||| | ||| || | ||||| ||| Sbjct 508302 TACCTGATTTATTTATGAAAAGAGTAAAGGAAAATAAGAACTGGACTTTAATGTGCCCTA 508361 Query 110929 ATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAAT 110988 | | ||| || || ||| | || |||| |||||| | | || ||||| Sbjct 508362 ACGAATGTCCAGGCTTAAGTGAAACCTGGGGTGAAGAATTTGAAAAATTATATACAAAAT 508421 Query 110989 ATGAAAAAGAAGGCAAGTTTCGCAAACA---AATTCCAGCTCAAGAACTTTGGTTCAAAA 111045 | ||| ||||| || || | ||| | ||||| || ||||| | ||||| | Sbjct 508422 ACGAAGAAGAA---AATCTTGGAAAAAAAACAATTCTTGCACAAGATTTATGGTTTGCTA 508478 Query 111046 TCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGAT-CATATTAAT 111104 | | || ||| | |||||||| || ||||| || ||||||||| ||| |||| Sbjct 508479 TATTACAAAGCCAAATAGAAACTGGTGTACCATATATGTTATATAAAGATGCAT-GTAAT 508537 Query 111105 CGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGCTGTG 111159 ||||| ||||||| ||||||||||||||||| | |||||||| || |||| Sbjct 508538 TCTAAATCGAATCAAAAAAATTTAGGAACAATTAAATGCAGTAATTTATGTTGTG 508592 Score = 109 bits (120), Expect = 1e-18 Identities = 475/746 (64%), Gaps = 69/746 (9%) Strand=Plus/Plus Query 112581 ACAAAAGTTATTACACGTAACCTAAATAAAATTATTGACAAAACGACCTATCCAATTCAA 112640 || ||| ||||||| | || || ||||||||||||| | || |||||| || || Sbjct 508712 ACTAAAATTATTACTAGAAATTTAGATAAAATTATTGAAAGAAATTATTATCCAGTTAAA 508771 Query 112641 AAAGCAAAACATTCTAATAACAAGCATAGACCAATTGGCATTGGCGTACAAGGATTAGCT 112700 |||| || || ||||| | |||||||| ||||| || || |||||||||||||| Sbjct 508772 GAAGCGGAAAGATCAAATAAAAGACATAGACCTATTGGAATAGGAGTACAAGGATTAGCA 508831 Query 112701 GATGTATTTATGATGATGCGAATTCCTTTTGATTCTGACCGTGCTAAATTCTTAAATGAA 112760 ||| ||||||| | | || ||| | ||| ||||| |||||| |||||| | Sbjct 508832 GATACATTTATGCTTTTAAGATATCCATATGAATCTGAAGAAGCTAAAGAATTAAATAGA 508891 Query 112761 AAGATTTTCGAAACAATCTATTTCGCTGCTATGACTGAATCTAATGAACTTGCTATTaaa 112820 | || || ||||| || |||| |||||| | ||| | || || || Sbjct 508892 AGAATATTTGAAACTATGTATTATGCTGCTTT------------AGAAATGTCTGTTGAA 508939 Query 112821 aaagcagaaaaatcaaagaaaaCTGATTTGAA--ATTTCCAGGAGCTTATGATAGTTTCG 112878 ||| || ||| || || |||| || || ||| |||| | Sbjct 508940 TTGGCACAA----GTAAGTGGAC-CATATGAATCATATCAAGG---------TAGTCCAG 508985 Query 112879 AAGGCTCACCTTTTTCACAGGGAAAATTCCAATTTGACCTTTGGGAT-CAACAGCCTCTT 112937 | || || |||| ||| |||||||| | ||| || ||| || | Sbjct 508986 CAAGC------------CAAGGAATATTACAATTTGATATGTGGAATGCAAAAG----TA 509029 Query 112938 GACAATGAACCAAAATAT---GATTGGAAAAATCTTAAAGATAGTGTTATG-AAACATGG 112993 || ||| |||||| |||||| | | ||||| | | || | ||||| || Sbjct 509030 GATAAT------AAATATTGGGATTGG-GATTTATTAAAAAAAAAAATAAGTAAACACGG 509082 Query 112994 AACTACAAACTCTCTACTGTTGGCACCAATGCCTACAGCTTCGACTGCACAGATTCTCGG 113053 | | ||| ||||| || || ||||| ||||| |||||||| || |||| ||| | || Sbjct 509083 ATTAAGAAATTCTCTTCTTTTAGCACCTATGCCAACAGCTTCAACGTCACAAATTTTAGG 509142 Query 113054 TAATAATGAATGTTTCGAGCCAATTACAAGTAATATTTATGTCCGACGTGTTCTAGCAGG 113113 |||||||||| || || ||| ||||||||| |||||| | |||||||| || || Sbjct 509143 AAATAATGAATCCTTTGAACCATATACAAGTAACATTTATTACAGACGTGTTTTAAGTGG 509202 Query 113114 TGAGTTTGTACTTTGTAATAAAT----ATCTGCAAGAAGAACTTCTCGGAATCGGTAAAT 113169 ||| || |||||| | ||| || || | |||| ||| | | | ||| | Sbjct 509203 TGAATT----CTTTGTTGTTAATCCTCATTTGTTAAAAGATCTTTTTGATAGAGGTCTTT 509258 Query 113170 GGAACAATGAAGTGAAAAACTCCATT-ATTGCTAATCAAGGTTCGGTTCAACATCTAA-- 113226 || | | || ||||| | | ||| ||||| || | || |||||| || | | Sbjct 509259 GGGATGAAGATATGAAACA-ACAATTAATTGCCCATAATGGAAGTGTTCAATATATTAGC 509317 Query 113227 -AATTGCCTGATTGCGTGAAAGATGTATTTAAGACTATTTGGGAAATTAAGCAACGTGTC 113285 || | ||| | | ||||||| | | ||| || |||||||||| || ||| Sbjct 509318 GAAATACCTAGTGACTTGAAAGAGTTGTATAAAACCGTTTGGGAAATCAAACAAAAAAAT 509377 Query 113286 GTAATTGATATGGCTGCAGATCGTGG 113311 | |||||||||||||| |||||||| Sbjct 509378 ATTATTGATATGGCTGCTGATCGTGG 509403 >seq7 Length=1169068 Score = 111 bits (122), Expect = 4e-19 Identities = 274/406 (67%), Gaps = 21/406 (5%) Strand=Plus/Minus Query 58937 ACATAAAATTGACATAAAATATGACAAGGAGGAAGTGCCATTTTATCAATATCACTTACA 58996 |||||||||||||||||||||||||||||||| | |||||||| ||| | ||| ||||| Sbjct 995650 ACATAAAATTGACATAAAATATGACAAGGAGGTAATGCCATTTGATCTAAATCTTTTACA 995591 Query 58997 TTCCATGCACTGAAAATAATGCGACGAGAATGAGGGTCATTTTTAATAAGTTCTTCACAA 59056 |||||||||| |||||||| || | | | || || |||||||| | | | | | Sbjct 995590 TTCCATGCACATAAAATAATTCGTCTACATGTCGGATCGTTTTTAATTAAATTTATAATA 995531 Query 59057 TGTTTTATTTGGTCAAATCCATTA---GTATATTCAGTATTGGCATCAATGTATTTATCT 59113 | ||||| || |||| || ||| |||| |||| || ||| | |||| | | Sbjct 995530 TTTTTTAACTGATCAACACCTTTATCTTTATAATCAGCATGCATATCTGTATATTCAGCA 995471 Query 59114 CCCCAATAACGCCATTGAAAACCATATACAGGTCC-AAG--AGTTCCTTCAGGAT--ATT 59168 || | | | ||||||||| || || | || || ||| | | |||| || | | Sbjct 995470 CCAAAGTGCCTCCATTGAAATCCGTAAATTGGACCTAAGTCATTAACTTCTCTATGAAAT 995411 Query 59169 CATTTAAACCACGAGAGTCAAGAAATTCTCTTGTTGAATTACCATCCCAAATATGAACAT 59228 |||| | | || | ||| |||||||| |||| | ||||| || || | Sbjct 995410 AATTT-----CCTATTATCTAAAAACTCTCTTGTCCCATTAGCTTCCCATATTCTTACGT 995356 Query 59229 TATTATCATTAAGAGATTTATT---ATCTGTTTTTCCAGATAGAAACCATAACAATTCCT 59285 | || || ||| | || |||| || ||||| ||| || |||||||| ||| || | Sbjct 995355 TTTTTTC--TAATA-ATGTATTTCCATTTGTTTCTCCCCTTATAAACCATAGCAACTCTT 995299 Query 59286 TAATG-CAAATTTTCCAAGCAACtttttttGTTGTAAGCATTGGAA 59330 |||| | | || ||| || |||||||||||| | | ||||| Sbjct 995298 CAATGATACCTCTTACAAATAA-TTTTTTTGTTGTTAATAATGGAA 995254 >seq13 Length=2616835 Score = 100 bits (110), Expect = 7e-16 Identities = 115/154 (75%), Gaps = 8/154 (5%) Strand=Plus/Minus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 || ||||| |||||||| | ||| ||||| || ||| |||||||| ||| Sbjct 1835572 TTTAATAGACAACCATCTTTACATCGTATGTCAATTATGTGTCATAAAGCTCGAGT---- 1835517 Query 305396 TCTGGATTG----ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTT 305451 | |||||| |||||||| || |||| | ||| |||| || |||||||| ||||| Sbjct 1835516 TATGGATTATAAAACATTTCGCTTTAATGAATGTGTATGTAGTCCATATAATGCAGATTT 1835457 Query 305452 TGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 |||||| |||||||||||| | |||||||||||| Sbjct 1835456 TGATGGGGATGAAATGAATTTACATGTACCTCAA 1835423 >seq8 Length=1360204 Score = 95.1 bits (104), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 306249 ATAGAACATTACCATTATTTAGTAAATTTGATAATGGTTTAGATGCTCGTGGATTCATAT 306308 ||||| |||||||| |||| ||||||||| |||| ||| | | || || | | Sbjct 341075 ATAGATCATTACCACATTTTATTAAATTTGACTATGGACCAGAAAGTAGAGGGTTTGTGT 341016 Query 306309 CAAGTTC--ATTTAAACAAGGACTATCTCCTTCTGAATACTTCTTTCATGCAATTAGCGG 306366 ||| ||| |||||| ||| || | || ||| ||| |||||||| || | || Sbjct 341015 CAAATTCTTATTTAAGT--GGATTAACGCCACAAGAAGTCTTTTTTCATGCTATGGGAGG 340958 Query 306367 ACGTGACGGTGTTATTGATACTGCTTGTAAGACAGCAAGTATTGGTTATCTCCAAAGAAA 306426 | || ||| ||||||||||||||||||| ||| || | ||||||| | ||||||| Sbjct 340957 TAGAGAAGGTATTATTGATACTGCTTGTAAAACATCAGAAACTGGTTATATACAAAGAAG 340898 Query 306427 ATTAATGAAAACGCTTGAAGATATT 306451 |||||| ||| | | |||||| || Sbjct 340897 ATTAATTAAAGCTATGGAAGATGTT 340873 Score = 86.0 bits (94), Expect = 1e-11 Identities = 132/186 (71%), Gaps = 8/186 (4%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||| ||| ||| | |||| | | || ||| | || |||||| | ||||||||| Sbjct 342366 AGACATATGACTGATGAAGATTACATATTATTTAATCGACAGCCATCATTACATAAAATG 342307 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 ||| |||| || |||| ||| |||| || | || ||||| |||||| || Sbjct 342306 AGTATTATGGGACACAAAGCAAAAATATTGCCTTATTCTACCTTTCGTTTAAATTTA--- 342250 Query 305426 GCTTGTA----CGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACC 305481 ||| ||| | || |||||||| |||||||| || ||||||||||| | ||| || | Sbjct 342249 GCT-GTAACATCACCATATAATGCCGATTTTGACGGTGATGAAATGAACTTACATTTAGC 342191 Query 305482 TCAATC 305487 |||||| Sbjct 342190 TCAATC 342185 >seq10 Length=1634725 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/134 (75%), Gaps = 6/134 (4%) Strand=Plus/Plus Query 167239 TCATTACACCACCAGCATTATCGAATTCATTCGCATAATTTGGTGCTGAAAATACAGTAA 167298 |||| | | | || |||||||| ||||| |||||| || || ||||||| ||||| Sbjct 1130395 TCATCATAGCCCCTGCATTATCAAATTCGCCACAATAATTGGGGGCAGAAAATAAAGTAA 1130454 Query 167299 CTAATTTACGATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGC---ACGTA 167355 |||||| | || ||| ||||||||||||||||| ||||||| ||| || || || Sbjct 1130455 CTAATTGTCTTTTTGCAAAAAATTCATAACCATCTTCTACAACTTGATGTGCTCTACATA 1130514 Query 167356 TTA---CAAGTTCA 167366 ||| |||||||| Sbjct 1130515 TTAAATCAAGTTCA 1130528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812206964479