Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq6 107 2e-18 seq11 87.8 2e-12 >seq6 Length=916956 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 131912 AAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCT 131971 ||||| || |||| | || |||||||||||||||||||| | || | |||| Sbjct 466404 AAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCAGATAGTGTTCTACCATCT 466345 Query 131972 TCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCG 132031 || | ||||| |||| | | |||| | |||||||| ||||| || ||||||||||| Sbjct 466344 TCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGAGGAATACCTTCTTTATCT 466285 Query 132032 GTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTT 132091 |||||| ||| | | ||| | ||||| | ||||| || || | || | ||| Sbjct 466284 TGAATTTTAGCTTTAACATTTTCAATGGTATCAGATGGCTCAACATCAAGAGTGATTGTT 466225 Query 132092 TTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || | |||||||| |||||||||||| Sbjct 466224 TTCCCGGTTAAAGTTTTTACGAAAATCTGCAT 466193 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 131912 AAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGT--ACGCGAA 131968 ||||| ||||||| | | || |||||||||||||| ||||| | | ||| | || || Sbjct 466632 AAAACTAAATGTAAGGTAGATTCTTTTTGAATGTTATAGTCAGATAATGTTCTAC-CG-- 466576 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | ||||| || | | |||| | |||||||| || || || ||||||||| Sbjct 466575 TCTTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTA 466516 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| ||| | | ||| | |||||| | || || || || | || | Sbjct 466515 TCTTGAATTTTGGCTTTAACGTTTTCAATAGTATCTGATGGTTCAACATCAAGAGTAATT 466456 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || || | ||||||| |||||| ||||| Sbjct 466455 GTTTTTCCGGTTAATGTTTTTACGAAAATTTGCAT 466421 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 131912 AAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCT 131971 ||||| || |||| | | || ||||||||||||||||| || | || | ||| Sbjct 466176 AAAACTAAGTGTAAGGTAGATTCTTTTTGAATGTTGTAATCAGATAGTGTTCTTCCATCC 466117 Query 131972 TCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCG 132031 || | ||||| || | | |||| | |||||||| || || || ||||||||||| Sbjct 466116 TCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGGAATACCTTCTTTATCT 466057 Query 132032 GTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTT 132091 |||||| ||| | | ||| | |||||| | || || || || | || | ||| Sbjct 466056 TGAATTTTAGCTTTAACATTTTCAATAGTATCAGATGGTTCAACATCAAGAGTAATTGTT 465997 Query 132092 TTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || | |||||||| |||||||||||| Sbjct 465996 TTCCCGGTTAAAGTTTTTACGAAAATCTGCAT 465965 >seq11 Length=1720574 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTC-GCTCATGGTACGCGAATCTTC 131973 |||||||||| | ||||||||||||||||||| ||||| | | || || | |||||| Sbjct 1496423 ACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAAT-GTTCTTCCATCTTC 1496481 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | ||||| || | | |||| | |||||||| || || || ||||||||||| Sbjct 1496482 TAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTG 1496541 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 |||||| ||| | | ||| | ||||| | || || || || | || | ||||| Sbjct 1496542 GATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTTT 1496601 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || | ||||||| || || ||||| Sbjct 1496602 TCCGGTTAATGTTTTTACAAAGATTTGCAT 1496631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610967652040