Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq6 122 7e-23 seq11 96.9 3e-15 >seq6 Length=916956 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||| || |||||||| || || || || ||||| | || ||||| Sbjct 466421 ATGCAAATTTTCGTAAAAACATTAACCGGAAAAACAATTACTCTTGATGTTGAACCATCA 466480 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | || ||| |||||| || |||||||| | || ||||||| Sbjct 466481 GATACTATTGAAAACGTTAAAGCCAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAA 466540 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| | |||| || || |||||||||||||| || ||| | || || ||| Sbjct 466541 CAAAGATTAATTTTCGCTGGAAAACAATTAGAAGACGGTAGAACATTATCTGACTATAAC 466600 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || |||||||||||||| |||||||||| || || ||| ||||||| Sbjct 466601 ATTCAAAAAGAATCTACCTTACATTTAGTTTTAAGATTAAGAGGAGG 466647 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| ||||| || ||||| || || || || || ||||| | || ||||| Sbjct 465965 ATGCAGATTTTCGTAAAAACTTTAACCGGGAAAACAATTACTCTTGATGTTGAACCATCT 466024 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | || ||| |||||| || |||||||| | || ||||||| Sbjct 466025 GATACTATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATTCCACCTGATCAA 466084 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| | |||| || || ||||||||||| ||| | ||| | ||||||||| Sbjct 466085 CAAAGATTAATTTTCGCTGGAAAACAATTAGAGGATGGAAGAACACTATCTGATTACAAC 466144 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || |||||||||||||| |||| ||||| || || ||| ||||||| Sbjct 466145 ATTCAAAAAGAATCTACCTTACACTTAGTTTTAAGATTAAGAGGAGG 466191 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| ||||| || ||||| || || || || || || || | || || || Sbjct 466193 ATGCAGATTTTCGTAAAAACTTTAACCGGGAAAACAATCACTCTTGATGTTGAGCCATCT 466252 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || ||| |||||| || |||||||| | || ||||||| Sbjct 466253 GATACCATTGAAAATGTTAAAGCTAAAATTCAAGATAAAGAAGGTATTCCTCCTGATCAA 466312 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| | |||| ||| || ||||||||||||||| || ||| | || |||||| Sbjct 466313 CAAAGATTAATTTTTGCCGGAAAACAATTAGAAGATGGTAGAACACTATCTGACTACAAC 466372 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || ||||||||||| || |||| ||||| || || ||| ||||||| Sbjct 466373 ATTCAAAAAGAATCGACTTTACACTTAGTTTTAAGATTAAGAGGAGG 466419 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 106344 AAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAA 106403 |||||| || |||||||| | || |||||||||||| | |||| ||| || || Sbjct 465821 AAAATTCAAGATAAAGAAGGTATCCCACCTGATCAACAAAGATTAATTTTTGCTGGAAAG 465880 Query 106404 CAATTAGAAGATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACAT 106463 |||||||||||| | ||| | || || ||||| |||||||||||||| |||| Sbjct 465881 CAATTAGAAGATGGAAGAACATTATCTGACTATAACATTCAAAAAGAATCTACCTTACAC 465940 Query 106464 TTAGTATTGAGGTTACGAGGAGG 106486 ||||| || || ||| ||||||| Sbjct 465941 TTAGTTTTAAGATTAAGAGGAGG 465963 >seq11 Length=1720574 Score = 96.9 bits (106), Expect = 3e-15 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 106252 GTTTA--AAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAAC 106309 ||||| ||||||||||| ||||| |||||||| || || || || || || | || Sbjct 1496641 GTTTACGAAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATCACTCTTGATGT 1496582 Query 106310 AGAACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCC 106369 ||||| ||| | ||| | || ||| |||||| || |||||||| | || Sbjct 1496581 TGAACCATCTGATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCC 1496522 Query 106370 CGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGG 106429 | |||||||||||| | |||| || || ||||||||||||||| | ||| | Sbjct 1496521 CCCTGATCAACAAAGATTAATTTTCGCTGGAAAACAATTAGAAGATGGAAGAACATTATC 1496462 Query 106430 CGATTACAACATACAAAAAGAATCTACACTACATTTAGTA 106469 || || ||||| |||||||| || || ||||||| ||| Sbjct 1496461 TGACTATAACATTCAAAAAGAGTCAACCTTACATTTGGTA 1496422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402329408767712