Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq14 89.7 8e-13 >seq14 Length=2514833 Score = 89.7 bits (98), Expect = 8e-13 Identities = 184/274 (67%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 160968 TAATCTCTGGTATAACTGGGCAGGATGGATCCTATCTTGCTGAACTTCTACTGAAGAAGG 161027 |||| | |||||| || || |||||||| || ||| | ||||| || | | || | Sbjct 924150 TAATATTTGGTATCACAGGACAGGATGGGTCATATTTGAGCGAACTACTTTTAGAAAAAG 924091 Query 161028 GGTATGAAGTCCATGGTATTATTCGTAGAACCTCCTCGTTTAATACAGGAAGAATCGATC 161087 | |||||||| ||||| | ||| | || | ||||||||| |||||| |||| Sbjct 924090 GATATGAAGTTCATGGGGTGATTAGGAGGTGTAGTACATTTAATACAAAAAGAATAGATC 924031 Query 161088 ATATCTTCGATCAGTTACACCTCCACTACGGGGATTTGACTGACTCCCTGAACATAGTCT 161147 |||| || || | ||| | | || || || ||||| ||| || ||| | | Sbjct 924030 ATATATTTGAAAAATTAAATTTACATTATGGTGATTTACTTGATAATAGTAATATATTTT 923971 Query 161148 CTATCATTAAGGAAGTAGAACCTGATGAGATCTACAACCTAGGGGCACAGAGTCATGTGA 161207 || | || || || |||| |||| || || || ||| ||||| |||||||| | Sbjct 923970 CTTTAATATCTAAAATAAAACCAAATGAAATATATAATTTAGCTGCACAAAGTCATGTAA 923911 Query 161208 AAGTATCTTTCGAGGAACCTGAATATACAGCACA 161241 ||||| || || |||||||||||||||||| Sbjct 923910 AAGTAAGCTTTGAATTACCTGAATATACAGCACA 923877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729929244159320