Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq6 457 1e-123 seq10 239 6e-58 >seq6 Length=916956 Score = 457 bits (506), Expect = 1e-123 Identities = 1145/1717 (67%), Gaps = 38/1717 (2%) Strand=Plus/Minus Query 68515 TGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTCC 68574 || || |||||| || | ||| || ||||| | |||||| | ||||| |||||| Sbjct 509418 TGGTCAATGAAAATACCACGATCAGCAGCCATATCAATAATATTTTTTTGTTTGATTTCC 509359 Query 68575 CAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAG---GCTCGTATTTTGAATGGAT 68631 |||| || ||| | | || ||| | ||| || | ||| ||| ||||| | Sbjct 509358 CAAACGGTTTTATACAACTCTTTCAAGTCACTAGGTATTTCGCTAATATATTGAACACTT 509299 Query 68632 CCACCATCGGATAT-AATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAA 68690 ||| || || || |||| | | || || || |||| ||| | ||| || | Sbjct 509298 CCATTATGGGCAATTAATTGTTGT-TTCATATCTTCATCCCAAAGACCTCTATCAAAAAG 509240 Query 68691 AACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTA 68750 | || | | | ||| |||||||| | ||||| ||| ||| || ||| |||| Sbjct 509239 ATCTTTTAACAAATGAGGATTAACAACAAAGAATTCACCACTTAAAAC---ACGTCTGTA 509183 Query 68751 A---ATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGA 68807 | || ||||| ||||||||||| | |||||||||||||| | |||||| | ||||| Sbjct 509182 ATAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGACGTTGA 509123 Query 68808 TGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATC 68867 || |||||||||||||| | | | | |||||| | || ||| | | ||||| | Sbjct 509122 AGCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCGTGTTTACTTATTTTTTT 509063 Query 68868 TTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAA---CATTCCAAAGATCGTATTG 68924 ||||| | |||||||||| | | ||| ||||||| | ||| |||| Sbjct 509062 TTTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTG 509003 Query 68925 TAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGGTCC--TTCCTGTTCA 68982 || ||||| | ||||| || | ||||| |||||| ||||| || || | Sbjct 509002 TAATATTCCTTGGCTTGCTGGACTACCTTGATATGATTCATATGGTCCACTTACTTGT-- 508945 Query 68983 GCTAGTTCA-CA-ACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAAT-CTTCTTA 69039 || | |||| || || | ||||| ||| | ||||| || ||||| || || ||||| | Sbjct 508944 GCCAATTCAACAGACATT--TCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-A 508888 Query 69040 TTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCC 69099 || | |||| |||||| | || ||||||| |||||| ||||||| |||||| Sbjct 508887 TTTAATTCTTTAGCTTCTTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCT 508828 Query 69100 AATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGA 69159 ||||| || || || || || |||||||||||||| |||||||| ||||| |||||| | Sbjct 508827 AATCCTTGTACTCCTATTCCAATAGGTCTATGTCTTTTATTTGATCTTTCCGCTTCTTTA 508768 Query 69160 ATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACG 69219 | ||||||||||| | || |||||||||| | ||||| | || || ||| | | Sbjct 508767 ACTGGATAATAATTTCTTTCAATAATTTTATCTAAATTTCT-AGTAATAATTTTAGTAAT 508709 Query 69220 -TCCTTTAGTTTGAGAAAATCAAATCGTCCAT-----CTAT-AACAAACATATTCAGTGC 69272 || | || ||| ||||| |||| | | |||| |||||| | | ||| Sbjct 508708 ATCATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGC 508649 Query 69273 TACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGT 69332 | || |||| ||||||||| ||||| |||| || || ||||| || || || Sbjct 508648 AATGGAAGCTAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACA 508589 Query 69333 ACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGC 69392 ||||| |||||| ||||| || || || | ||||| ||||| || ||||| || Sbjct 508588 ACATAAATTACTGCATTTAATTGTTCCTAAATTTTTTTGATTCGATTTAGAATTACATGC 508529 Query 69393 GTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAGATTTCCA 69452 || || || | ||| | || ||||||||| || || || | |||| ||| Sbjct 508528 ATCTTTATATAACATATATGGTACACCAGTTTCTATTTGGCTTTGTAATATAGCAAACCA 508469 Query 69453 AACGACCCTAGCATTTATTACGGTCTTGTAACGCTTCTCTTTTTCATATTGTGTATATAG 69512 | | ||| ||| | || | | || |||| ||| |||| |||||||| Sbjct 508468 TAAATCTTGTGCAAGAATTGTTTTTTTTCCAAGATTTTCTTCTTCGTATTTTGTATATAA 508409 Query 69513 CCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACACATCAA 69572 ||| ||||| || ||||| ||| || || |||||||| || || ||||| || Sbjct 508408 TTTTTCAAATTCTTCACCCCAGGTTTCACTTAAGCCTGGACATTCGTTAGGGCACATTAA 508349 Query 69573 TGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTAT 69632 | ||| | || ||||| |||| ||||||||||| ||| || | ||||| ||| Sbjct 508348 AGTCCAGTTCTTATTTTCCTTTACTCTTTTCATAAATAAATCAGGTACCCAAATAGCATA 508289 Query 69633 AAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttAAGATCGAGAAACTC 69692 ||| | ||| | | ||| |||||| || || ||||||| | | ||| | ||| || Sbjct 508288 AAATAAATCACGAGCTCTCAATTCTTCTTTACCATGATTTTTTCTTAAATCTAAAAATTC 508229 Query 69693 CATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCC 69752 | |||||| |||||||||||||| | ||||| || | || || ||| ||| Sbjct 508228 AAAAATATCTGAATGCCATGGTTCAACATATACAGCAAAAGAACCTTTTCTTTTTCCTCC 508169 Query 69753 TCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCATT 69812 || ||||||| ||||| || || | |||| | ||||| | |||||| | | |||||| Sbjct 508168 ACCTTGATCTACATATCTTGCTGTATCATTAAAAACTCTTAACATCGGGACTAAACCATT 508109 Query 69813 AGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAG 69872 ||| ||||||| ||||| || ||| | || | ||||| | || | Sbjct 508108 TGATATACCATTAGTTCCTCTGATGTAAGAATTTTGAGCTCTAATATCTTGTACAGCCAC 508049 Query 69873 ACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACC 69932 |||||| |||||||| ||||| || | ||||| | || ||||| ||| ||||||| Sbjct 508048 ACCTATACCTCCTGCTGTTTTACTAATCAATGCACATTGCTTTAATGTTTCAAATATACC 507989 Query 69933 CTCTATGCTATCATCTATCA-TGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAG 69991 ||||| |||| | ||| || ||| || ||| || ||||||||| | | | Sbjct 507988 TTCTATTGAATCAGATTTCATTGATAATAA-AAAGCATGAAGACATTTGGGGTCTTGGTG 507930 Query 69992 TTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGT 70051 |||||| ||||||||||||||||| || ||||| || |||||| || | | || | Sbjct 507929 TTCCCGAATTAAATAATGTAGGAGTAGCATGAGTAAAATATTTTTGTGACATTAAATGAT 507870 Query 70052 ATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAACA 70111 | ||||| | ||| ||| | ||| ||| |||||||| | || | ||| || | Sbjct 507869 AAGTTTCTAAAGCCTTTTCAAGATCATCTATATGTATTCCTATAGATACTCTCATTAATA 507810 Query 70112 TATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGAG 70171 ||||||||| ||||| | |||||||||| || || | ||| || |||| | | Sbjct 507809 AATGCTGAGGACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTTTCTAATG 507750 Query 70172 TTTTAAACCCAAAATAGTTGTA--TGAAAAGTCTCTT 70206 ||||||| |||||||| | || ||||| |||||| Sbjct 507749 TTTTAAATCCAAAATAATCATAATTGAAA--TCTCTT 507715 >seq10 Length=1634725 Score = 239 bits (264), Expect = 6e-58 Identities = 386/550 (70%), Gaps = 10/550 (2%) Strand=Plus/Minus Query 39632 TGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCA 39691 |||| || |||||||||||||| ||||| ||| |||||| | ||| | | | | Sbjct 1455474 TGTAATCCTTCATCTCTACTAATCAATTCATTACTAAATGTTAAACCATGTAATTTATTT 1455415 Query 39692 CGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCT 39751 | ||||| | ||||||||| ||| |||| |||| ||| || || ||||| || | Sbjct 1455414 TGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCTTCGACACAT 1455355 Query 39752 GCAAATGCAACAAGTCTCTCTCCGTAAC---TTGTATCATTATGTATCCACTTCTGTGCC 39808 ||| || |||| ||| || | || | |||||||| |||||| || |||| Sbjct 1455354 GCATTAGCTACAATTCTTTCAGCAAAAGAGTTCGTATCATT---TATCCATTTAGCTGCC 1455298 Query 39809 CAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAT--AATGTT 39866 || ||||| || |||| || || |||| ||||||| ||| | || ||| | Sbjct 1455297 CATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTTAATCTC 1455238 Query 39867 TTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGT 39926 | | || | ||| ||| ||| |||| ||||| | |||||| |||| || || || | Sbjct 1455237 TCTT-TCTC-ATCCCTAATATAATTATCAATTAATAAACTATAGGTTTCAGAGTGTATAT 1455180 Query 39927 TTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAAC 39986 |||||| || || ||||| | ||||| | | |||||| | |||||||| ||| Sbjct 1455179 TTTCAACAGCTATTTGAAAAGCATAAAACTTTTTGGCTTCAATTATTTGTACTTCTCTTA 1455120 Query 39987 AAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046 ||||| | || |||||||| ||||||||||||||||| ||||||||||| | | Sbjct 1455119 AAAATTTACTAGCTAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAGCA 1455060 Query 40047 CATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTG 40106 ||||||| ||||||| |||||||| | ||||| | |||| || | ||| ||| Sbjct 1455059 CATGTTTTATAAAATGTTTTTCATTTACATTTAATTTTTCAAAGTCTTTCAAATCACTTG 1455000 Query 40107 ATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATA 40166 ||| ||||| ||||||||| |||||||| || ||||| || ||||| || | ||||||| Sbjct 1454999 ATAAATCTATTTCTTCAGCAGTCCAAAATGAGGCCTCAGCTTTTTTATAAAAATTCCATA 1454940 Query 40167 TATCACGATA 40176 ||| |||| Sbjct 1454939 CTTCAGGATA 1454930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908465131960