Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq6 132 4e-26 seq11 104 2e-17 >seq6 Length=916956 Score = 132 bits (146), Expect = 4e-26 Identities = 796/1251 (64%), Gaps = 50/1251 (4%) Strand=Plus/Minus Query 130556 TGATCAATAAAAGCGCCCCTGTCTGCAGCCATGTCGAGCATGGTTTTATTTTTCATCTCC 130615 || ||||| ||| || | || |||||||| || | || |||| | ||| || ||| Sbjct 509418 TGGTCAATGAAAATACCACGATCAGCAGCCATATCAATAATATTTTTTTGTTTGATTTCC 509359 Query 130616 CAAGCGGTCTTGTATAGATCCCTAATGTGTTTGGGTATGCGCGC-AATCGATTGAACGCT 130674 ||| |||| || || | || | | || | ||||| ||| ||| ||||||| || Sbjct 509358 CAAACGGTTTTATACAACTCTTTCAAGTCACTAGGTATTT-CGCTAATATATTGAACACT 509300 Query 130675 ACCGTTGTTGGCTATAATTTCGTTGCG-CATACTTTTATCGTACAATCCAAGCTGTACAA 130733 || || | ||| || | || |||| |||| || ||| | | || | | || Sbjct 509299 TCCATTATGGGCAATTAATT-GTTGTTTCATATCTTCATCCCAAAGACCTCTATCAAAAA 509241 Query 130734 GATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGT 130793 ||||||||| ||||||| ||||| | || |||||| | || ||||| | Sbjct 509240 GATCTTTTAACAAATGAGGATTAACAACAAAGAATTCACCACTTAAAACACGTCTGTAAT 509181 Query 130794 AAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTG 130853 ||||||| || || | |||||||||||||| || || || || ||||||| || | | Sbjct 509180 AAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGACGTTGAAG 509121 Query 130854 CGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCT 130913 | || ||||| ||| | | |||||||| | | ||||| | | |||||| | Sbjct 509120 CTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCGTGTTTACTTATTTTTTTTT 509061 Query 130914 TCAATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATT---GTTCCACATATCAAATT 130970 | ||| |||||||||||| | | || | || || |||||||||||||||| Sbjct 509060 TTAATAAATCCCAATCCCA---ATATTTATTATCTACTTTTGCATTCCACATATCAAATT 509004 Query 130971 GTAGTATGCCTTTACTGGCGGGACTGGATTCGAACGATTCGTAGATTCCTTCGACACGAG 131030 ||| ||| |||| || || ||||| || | ||||| || ||| || | | Sbjct 509003 GTAATATTCCTTGGCTTGCTGGACTACCTTGATATGATTCATATGGTCCACTTACTTGTG 508944 Query 131031 CCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAAATGGTTTCGGCAATTTGTTTATTTA 131090 ||| || ||| ||||| | ||||| || ||||| ||| | |||||| Sbjct 508943 CCAATTCAACAGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCTATTTA 508884 Query 131091 ATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTCATTAAAATAAAAGCGTCTGCGAGAC 131150 ||| ||| |||| | || || ||| || | | | ||||| | ||||| | | Sbjct 508883 ATTCTTTAGCTTCTTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAATC 508824 Query 131151 CCTGTATCCCAACGCCCACCGGTCTATG--TTTTAAATTACATTTACGCGAACATTCGGT 131208 | |||| || | || | |||||||| ||||| | | ||| ||| | || | Sbjct 508823 CTTGTACTCCTATTCCAATAGGTCTATGTCTTTTATTTGATCTTTCCGC-TTCTTTAACT 508765 Query 131209 GGGATAAAGGTTAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGCT 131268 |||||| || | ||||| ||||| | |||||| | | ||||| || | Sbjct 508764 -GGATAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATC 508706 Query 131269 TTTCAATTTGTCGAAATCAAACGTGCCAGTTTCGAGGTTTACAAA-TTGATTTACACATA 131327 | ||||| | |||| ||| |||| | ||||| ||| | | || | Sbjct 508705 ATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTGCATAATGCA-A 508647 Query 131328 TTGACGCCAGATTACAAACTGCCGTTTCGTCA--TAATCGCAATACTGAACAATTTCGGC 131385 | || || | ||||||||| || ||| ||| | || ||| | || |||||| Sbjct 508646 TGGAAGCTAAATTACAAACAGCTACTTCATCAGGTGAT--GTATATTCAATAATTTCACA 508589 Query 131386 GCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACATG 131445 || |||||||||| || || || || ||||||| |||||| ||||| ||| ||||| Sbjct 508588 ACATAAATTACTGCATTTAATTGTTCCTAAATTTTTTTGATTCGATTTAGAATT-ACATG 508530 Query 131446 -GTCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTGAGTTTCAATAATGTATCGAA 131504 || || || | ||| || || || ||||| | ||| ||| |||| || | || Sbjct 508529 CATCTTTATATAACATATATGGTACACCAGTTTCTATTTGGCTTT--GTAATATAGCAAA 508472 Query 131505 --AGAGTTTTCGAGCAGACAATTGATATTTGT-----ATTGGCCGCGTTTTTCGTAATTT 131557 | | | | | ||| | ||||| | ||| | ||| | || |||||| ||| Sbjct 508471 CCATAAATCTTGTGCA-AGAATTGTTTTTTTTCCAAGATTTTC----TTCTTCGTATTTT 508417 Query 131558 TCGTACAACGTTTCAAAGTTTTGGCCAAACG---AACTGTCCAAATTGGGACATTCGCTG 131614 || || ||||||| | || || | | ||| || ||||||||| | Sbjct 508416 GTATATAATTTTTCAAATTCTTCACCCCAGGTTTCACT---TAAGCCTGGACATTCGTTA 508360 Query 131615 GGACACATTAGCGACCACACGCCGTTCTGTTC---AACTCGCTTCATAAACAAATCCGGC 131671 || ||||||| | ||| | || | ||| |||| |||||||| ||||| || Sbjct 508359 GGGCACATTAAAGTCCA---GTTCTTATTTTCCTTTACTCTTTTCATAAATAAATCAGGT 508303 Query 131672 ACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttt-t 131730 ||||| | || || || | ||| | |||| | |||||| || |||| ||||||| | Sbjct 508302 ACCCAAATAGCATAAAATAAATCACGAGCTCTCAATTCTTCTTTA-CCATGATTTTTTCT 508244 Query 131731 CAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGC 131781 |||| |||||| || ||||| || | |||||| ||||| | ||| || || Sbjct 508243 TAAATCTAAAAATTCAAAAATATCTGAATGCCATGGTTCAACATATACAGC 508193 Score = 120 bits (132), Expect = 3e-22 Identities = 160/220 (73%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 27036 AATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTC 27094 || || |||||||| ||||| ||||||||||| || ||||| | | ||||| | |||| Sbjct 466632 AAAACTAAATGTAAGGTAGATTCTTTTTGAATGTTATAGTCAGATAATGTT-CTACCGTC 466574 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||| | ||||| || ||| |||| | | |||||||| || || | ||| |||||||| Sbjct 466573 TTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGGGATACCTTCTTTATC 466514 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 || ||| ||| | | |||| | ||| |||| | |||||| || ||||| || | Sbjct 466513 TTGAATTTTGGCTTTAACGTTTTCAATAGTATCTGATGGTTCAACATCAAGAGTAATTGT 466454 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 ||| || || | ||||| || || ||||||||| || || Sbjct 466453 TTTTCCGGTTAATGTTTTTACGAAAATTTGCATACCTCCT 466414 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 27036 AATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTC 27094 || || || ||||| ||||| ||||||||||| ||||| || | | |||| | | || Sbjct 466176 AAAACTAAGTGTAAGGTAGATTCTTTTTGAATGTTGTAATCAGATAGTGTT-CTTCCATC 466118 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 || | ||||| || ||| |||| | | |||||||| || || | ||| |||||||| Sbjct 466117 CTCTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGTGGAATACCTTCTTTATC 466058 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 || || ||| | |||| | ||| || | | |||||| || ||||| || | Sbjct 466057 TTGAATTTTAGCTTTAACATTTTCAATAGTATCAGATGGTTCAACATCAAGAGTAATTGT 465998 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 ||| || || | |||||| || || || |||||| || || Sbjct 465997 TTTCCCGGTTAAAGTTTTTACGAAAATCTGCATACCTCCT 465958 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 27036 AATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTC 27094 || || || ||||| || || ||||||||||| |||||||| | | |||| | | || Sbjct 466404 AAAACTAAGTGTAAAGTCGATTCTTTTTGAATGTTGTAGTCAGATAGTGTT-CTACCATC 466346 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||| | ||||| ||||| |||| | | |||||||| || || | ||| |||||||| Sbjct 466345 TTCTAATTGTTTTCCGGCAAAAATTAATCTTTGTTGATCAGGAGGAATACCTTCTTTATC 466286 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAACTTCTAGAGTTATAG 27213 || || ||| | |||| | || || | |||| ||||| || ||||| || | Sbjct 466285 TTGAATTTTAGCTTTAACATTTTCAATGGTATCAGATGGC-TCAACATCAAGAGTGATTG 466227 Query 27214 ATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCT 27254 ||| || || | |||||| || || || |||||| || || Sbjct 466226 TTTTCCCGGTTAAAGTTTTTACGAAAATCTGCATACCTCCT 466186 >seq11 Length=1720574 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTT 27096 |||||||||||| || || ||||||||||| || ||||| | | ||||| | | |||| Sbjct 1496422 TACCAAATGTAAGGTTGACTCTTTTTGAATGTTATAGTCAGATAATGTTCTTC-CATCTT 1496480 Query 27097 CGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGG 27156 | | ||||| || ||| |||| | | |||||||| || || | || |||||||| Sbjct 1496481 CTAATTGTTTTCCAGCGAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTT 1496540 Query 27157 CGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATT 27216 ||| || ||| | |||| | || || | | |||||| || ||||| || | || Sbjct 1496541 GGATTTTTGCTTTAACATTTTCAATTGTATCAGATGGTTCAACATCAAGAGTGATTGTTT 1496600 Query 27217 TGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || | ||||| |||||||||||||| Sbjct 1496601 TTCCGGTTAATGTTTTTACAAAGATTTGCAT 1496631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424934198023368