Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq6 120 4e-22 >seq6 Length=916956 Score = 120 bits (132), Expect = 4e-22 Identities = 419/640 (65%), Gaps = 13/640 (2%) Strand=Plus/Minus Query 110708 TAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 110767 || ||||| |||| |||||||||||| |||||||||| || || ||||||| || || Sbjct 509181 TAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGACGTTGAA 509122 Query 110768 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCT-TCTCCTTGATGCGTTC 110826 ||||||||||| ||||| | | |||| || | | || | | | ||| | || Sbjct 509121 GCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCGTGTTTACTTATTTTTTTT 509062 Query 110827 CTTGAGAACATCCCAGTCG---TAGTTGAGCT-TGGTTTCACCTTCCCACATGTCAAACT 110882 || | || |||||| || || || | | ||| | |||| |||| ||||| | Sbjct 509061 TTTAATAA-ATCCCAATCCCAATATTTATTATCTACTTTTGCATTCC-ACATATCAAATT 509004 Query 110883 GAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAG 110942 | | | |||||| || ||| ||| | | | | |||||| | || ||| | Sbjct 509003 GTAATATTCCTTGGCTTGCTGGACTACCTTGATATGATTCATATGGTCCACTTACTTGTG 508944 Query 110943 CCAATTCA-CAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTC 111001 |||||||| ||| | || | | || | |||||| |||||||| || | ||| Sbjct 508943 CCAATTCAACAGA-CATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCTATTT 508885 Query 111002 ATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGA 111061 | || || ||||| || || ||| ||| || | | | |||||| ||| || | Sbjct 508884 AATTCTTTAGCTTCTTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAAT 508825 Query 111062 CCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA-CTTTCGCGCAGTCTCAAC 111120 ||||| || || | ||||||||||| |||| |||| || ||||| ||| | ||| Sbjct 508824 CCTTGTACTCCTATTCCAATAGGTCTATGTCTTTTATTTGATCTTTC-CGCTTCTTTAAC 508766 Query 111121 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC 111180 |||||| ||||||| ||||| | | | || |||| | |||| ||| || || || || Sbjct 508765 TGGATAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATC 508706 Query 111181 ATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGA-AGGGCGA 111239 || | ||||| | ||| ||| | ||| || ||| | |||| | | || | Sbjct 508705 ATATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACA-AATTTGCATAATGCAA 508647 Query 111240 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 111299 | || || ||||| |||||||| ||||| ||| || || | |||||| || Sbjct 508646 TGGAAGCTAAATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAAC 508587 Query 111300 ATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 111339 |||| || | ||||| || || ||||| ||||| || Sbjct 508586 ATAAATTACTGCATTTAATTGTTCCTAAATTTTTTTGATT 508547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031693834400