Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20chabaudi_20chabaudi_20[refseq_20GCF_5F900002335.2_20201 4-08-27] 39 sequences; 18,867,781 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq6 136 5e-27 >seq6 Length=916956 Score = 136 bits (150), Expect = 5e-27 Identities = 813/1290 (63%), Gaps = 16/1290 (1%) Strand=Plus/Plus Query 104320 TCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTT 104379 ||| || || || || | || ||| | || |||||||||||||||||||| ||||| Sbjct 507898 TCATGCTACTCCTACATTATTTAATTCGGGAACACCAAGACCCCAAATGTCTTCATGCTT 507957 Query 104380 CCTTATCGCCAAC-AAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTG 104438 |||| ||| || || ||||| | ||||| | || ||| | | | | |||| Sbjct 507958 T-TTATTATCAATGAAATCTGATTCAATAGAAGGTATATTTGAAACATTAAAGCAATGTG 508016 Query 104439 CGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATA 104498 | || || || || ||||| || || | || ||| | ||||| | | Sbjct 508017 CATTGATTAGTAAAACAGCAGGAGGTATAGGTGTGGCTGTACAAGATATTAGAGCTCAAA 508076 Query 104499 AATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTAT 104558 | ||| || | || || |||||| |||| ||||| | | || ||| | | || | Sbjct 508077 ATTCTTACATCAGAGGAACTAATGGTATATCAAATGGTTTAGTCCCGATGTTAAGAGTTT 508136 Query 104559 TTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGTC---GAAAGGGATCTATCGCAG 104615 |||| | ||||| | |||||| |||||| ||| | |||| || ||| | || | Sbjct 508137 TTAATGATACAGCAAGATATGTAGATCAAGGTGGAGGAAAAAGAAAAGGTTCTTTTGCTG 508196 Query 104616 TCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAG 104675 | ||| |||| |||||||| | ||||| | || || | || || | || || | Sbjct 508197 TATATGTTGAACCATGGCATTCAGATATTTTTGAATTTTTAGATTTAAGAAAAAATCATG 508256 Query 104676 GTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCA 104735 || | || || | | || ||| | || | ||| | ||| | || ||| | || | Sbjct 508257 GTAAAGAAGAATTGAGAGCTCGTGATTTATTTTATGCTATTTGGGTACCTGATTTATTTA 508316 Query 104736 TGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTC 104795 |||| ||||| |||| | | || ||| || | | || || || | || || Sbjct 508317 TGAAAAGAGTAAAGGAAAATAAGAACTGGACTTTAATGTGCCCTAACGAATGTCCAGGCT 508376 Query 104796 TCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTC 104855 | || || |||||| || |||||| | || ||||| ||||| |||||| || Sbjct 508377 TAAGTGAAACCTGGGGTGAAGAATTTGAAAAATTATATACAAAATACGAAGAAGAAAATC 508436 Query 104856 GGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCT-CAAGTCTCAAACC 104914 | | || | | || ||| | ||| ||||| | ||| | |||| Sbjct 508437 TTGGAAAAAAAACAATTCTTGCACAAGATTTATGGTTTGCTATATTACAAAGC-CAAATA 508495 Query 104915 GAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAAC-CAAAAGAGTAATCAAAA 104973 || |||||| |||||| ||| | || ||||| || ||||| | ||| | |||||||| Sbjct 508496 GAAACTGGTGTACCATATATGTTATATAAAGATGCATGTAATTCTAAATCG-AATCAAAA 508554 Query 104974 GAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAA 105033 ||||| || || || | ||| | ||| ||||| | |||| |||| Sbjct 508555 AAATTTAGGAACAATTAAATGCAGTAATTTATGTTGTGAAATTATTGAATATACATCACC 508614 Query 105034 AGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGA 105093 ||||| ||||| ||||| | || || || || | ||| | ||| ||| ||| Sbjct 508615 TGATGAAGTAGCTGTTTGTAATTTAGCTTCCATTGCATTATGCAAATTTGTTGATAGAGA 508674 Query 105094 GACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCT 105153 | ||| |||| ||| | ||||| | | || |||| |||| | | || | ||| | Sbjct 508675 AAAAAAAGAATTTAATTTTAAAAAATTATATGATATTACTAAAATTATTACTAGAAATTT 508734 Query 105154 AAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAG 105213 | | | | ||||||| ||||||| ||| || ||| | || | ||| |||| || Sbjct 508735 AGATAAAATTATTGAAAGAAATTATTATCCAGTTAAAGAAGCGGAAAGATCAAATAAAAG 508794 Query 105214 ACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCA 105273 ||| | || ||||| | || || || || | || ||| ||| || |||| | | Sbjct 508795 ACATAGACCTATTGGAATAGGAGTACAAGGATTAGCAGATACATTTATGCTTTTAAGATA 508854 Query 105274 CGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCA 105333 ||| ||| || || ||||| || ||| | ||| | |||||||| || |||||| | Sbjct 508855 TCCATATGAATCTGAAGAAGCTAAAGAATTAAATAGAAGAATATTTGAAACTATGTATTA 508914 Query 105334 CGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGA 105393 || ||| | || | | || |||||| | || ||| ||||||||| | | | | Sbjct 508915 TGCTGCTTTAGAAATGTCTGTTGAATTGGCACAAGTAAGTGGACCATATGAATCATATCA 508974 Query 105394 GGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCA-AGC 105452 ||| |||||| ||||| | | ||||||||||||| |||| | | | | | Sbjct 508975 AGGTAGTCCAGCAAGCCAAGGAATATTACAATTTGATATGT-GGAATGCAAAAGTAGATA 509033 Query 105453 TTCACTA---CGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGA-AGGGTCTTCGTAAC 105508 | | || || |||| | | | || || | ||| | | | || | | || Sbjct 509034 ATAAATATTGGGATTGGG-ATTTATTAAAAAAAAAAATAAGTAAACACGGATTAAGAAAT 509092 Query 105509 AGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAA 105568 ||| || | || || ||||||||||| || || ||||||| || || ||||||||| Sbjct 509093 TCTCTTCTTTTAGCACCTATGCCAACAGCTTCAACGTCACAAATTTTAGGAAATAATGAA 509152 Query 105569 TGCTTTGAACCCTACACGACGAACATCTAT 105598 | ||||||||| || || | ||||| ||| Sbjct 509153 TCCTTTGAACCATATACAAGTAACATTTAT 509182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260515660360